HsaINT0033797 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180044051-180048705:+
Coord C1 exon
chr1:180044051-180044173
Coord A exon
chr1:180044174-180048535
Coord C2 exon
chr1:180048536-180048705
Length
4362 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TTCCATGTATCCATAAAAAGAAG
3' ss Score
1.09
Exon sequences
Seq C1 exon
GAAAAGTCCATCTGTTTCACTCTCTCAGAGTAAAGAAGGGACCCTTGACTCAAAGCATCAGAAGTATTCTGCTTCATATGATAGTTATTCTGAGTCTTCAGGATACAAGAATCATGATAGAAG
Seq A exon
GTGAAGACAATTTGATTTCTTTGTCAGTACAGTTTAGTAGATTGTGATAAATGGCTTAAACATTGCTTTCTTTGATTTCTTAATCTTGTTTATTTAAATAGAACAGTGTGTGCCCTTCAAAGTGCTGGCTTCCCTAATTAGCCAATTTACAAAATAGTTGGTCCATGTAATAATGTAACTACTGTTCCTTGAGAACCTACATTGTACAAGCATTGTATAAATTGTTCTTCCTGCATTTAATATTCACAGCAGCCTTCCAAGGCAGATGGTATTATCCTTATAGGTTAGAAAACTGAGGCTCATGGAGATGTTACTATGCAGCCATAAAAAATGATGAGTTCCTGTCCTTTGTAGGGACATGGATGAAACTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAACCAAACACCGCATGTTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGAAACATCACACTCCGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAATTTAAAAAAAAAGAATAATTAAACATAACTCCAAAAATAAAATAATTGTTGATTATAGGAAAAAAAAAAAGAAACCCATTCAAGGTCACATAAATAATGATACATCAAGGAATTGCACCTTAATTTATCTGCCTTCAAAGGCTGTGTTTATTGCACATTTCCTTGCTGACATTCATATTTCTTGATGTTACAAATTTTTATTGTTATAAAAAATATTGAATAGGCCGGGCACAGTGACTCACGCCTGTGATTCCAGCACTTTGGGAGGCCGAGGTGGGAAGATCACCTGAGGTTAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAGCCCCATCTCTACTAAAAAAACAAAAATTAGCCATGCGTGGTGGCGTGTGCCCATAATCCCAGCTACTCAGGAGGCTGAGGCATGAGAATCTCTTGAACTAGGGAGGCAGAGGTTGCAGCGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAGAAAAAAAAAATTGAATAGCTGTCATTGGTAGTTGGTGTGATATGAATGGCTATAGCTTTCAATTATGGTTCCATCTTGGGATTAGAAGATTTTAGAGGCTACTTTCCAGCATTTTTACAGTTAACATACTGACATTGTCAAGTATAGTAAAACCCCAATTTAAAAAATTAAATCATGAAACTAAAAGACATGAAAATGTGGGAAAAGTACCAAAAGTTATTGAGTAGCTATTATGTCTCTGAAACTATCTGATGTTCATTTAACCTTTACTGACACCTTCACTGAAACTTCATGTAAACCATCATCTGGATTACTATGGTGAACTCCTAATACTTGTCCTCATCCTCTAATCTTTCTCCACTCCATTAGCCACATGGTAACCAGAGTGATTTTTGTAAAATTTCTAGCCAATTTGGTTATTCACCTATTTGAAATCTTCAGTATCCCTCAGAATATTCAAATTAAGGTCTAAATTATTTAGCCTGGCATGAAAACTTTCTTTATAATTGAGCCTTTGGTCCATCTCTAGCCCCATCTCTTGGCATTTCCTCTCTTACTATACCCCACTCATTCTAACTATTTCCAGTTCTCTAGAAGAACCATGCTCTCTGTCTTCTGTGCCATTGCATATGATATACCTTCTTTCTAGACCATCCCACATCTCATTTCATTTAGTTTACTTTTACTTACCTTTCAAGAATCAGTGCTATCCCGTCTGCTTTAGCTCTCACCTAAGTGTTCTCCTACAGCACTGTGAGTATAGCTGTGATAGTCTTGACCACCCTATGTGTACATGTTTCTTTGTTAGTCAGTTACATTCTAGACTAGAAGCTCTTTGAGGGCTTCGTTTTCATCACCCCAGAAAGAAACTCAGTAACCATTAGCAGTTACTCCCTATACCCTCCTCTGGCAACCACTAATCTGTTTCCTATCTCCGTTCTCTATGGATTTGCCTATTCTGGATTTTTTATATAAATGGCATCATTACAGTATGTGGCCCTTTGTAACTGACTTCTTTCACTTAGCATGATGTTTTCAAGTTTCATGCATGTTGTAGCATGTATCACTACTTTGTTTATATGGCCAAATTATATTCTATTGCCTGGATATCCCACATTTTATTTATCCATTCATCAGTTGGTGGACATTTGGGTTGTTTCCACTTTTTAACTATTATAAGTAATGCTGTGAACATTCACATATAACCTTTTGTGTGGATATGTTTTCATTTCTCTTGAGTATATATTTAGGAATGGAATTGCTGGGTCATGTATGGTAGCTCTATGTTTAAATTTTTGAAGAATTGCAAAACTATTTTCCAAAGTAACTGCAGCATTTTATACTATTTTCCCACCACGTAAAATTTTTCTACAGTCCTCACCAATGCTTGTTGTTTTTTTTGTTATAGCCATCTTAGGGGGGACCATGCATACTTGTATCACCAGAACTTAGCAAAGTACCTAGCACACAGTAGGCAATCTACTACAAGTTTATTGAGTGAATGATTAGCATATAACTACTAATTGGTAGAATTGGGATTCAACCCCATGTCCTTCTGACTTGAAAGTCCCTACTGTGTGCTGCATTACATCTTTTACCTTATTGCTTTATTAGAAGATTTATGTTTTCAAAAACTTATTAAACCAAACAATTGCATTATATTCTGATAAGTACTGTCATAGAAATATACACAAAAAAACAGTATGAACACAGGGACAGAAGTGACCAAAGCTTCCTTGAGAGTTGGGGTGGGATCCATGGAGTTTCTTAGAAATAACACTTGAACTGATTCTTGAATTCCATAGGTCGTTAGGCAGACACAGCAGCAAGGGCATTTTGGAAGAGGAAATAAGCATGTGCTGAGGATCCTAAGTATATTAACCTGGCTTGTGTAATGAATGAATAAACCAAGAAATGTAAGGAGGAGAAAGCTTGGGGGAATATACGTTTCGTTTGTTGGCTGAGGAATAGCCAAAATCAGAAGTTCACATGGCATTTCAATACTTGAAGCTTAAAATCAAGGGAAGGGCAAAGATAATGATACAAATTTGAGGCTCACTCTAAATGATAGTAGTTGAAGTTATGGTTAAGATTGCCCAAGGAGAATATGTAATATAAAAGAGAAAGAGGGCCAGCATGGTGGCTTACATCTGTAATCCCAGCACTTTGGGAGACCGAGGCAGGTGGATCATCTGAGGTTAGGAGTTCAAGATCAGCCTGGCCAACATAGCGAAGCCCCATCTCTACTAAAAATACAAAAAAAAAATTAGCCAGGTGTTGTGGCACATGCCTGTAATCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAATCCAGGAAGTGGAGGTTGCAGTGAACCAAATTGTGCCACTGCACTCCAGCCTGGGCGACAGAATGAAACTCCTCAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGGACCAAAACAGAACCATCAATTTTAAGGAAAGACAGAAAAATTTAAAGCAAATGAAAGAAACAAGGAAAGCTTGTTAGAGAGATGGGAAAAGCAGGTGAGAGTAAAATCATAGGATATAAGAAGGGAGGGCTCTTTTATTTAACATTTAATTTTGACATGATTTCAAGCTTATAGAAAAGTTGCAAGAATAATAGAAAGTCCTCAAATATCTTTCATCCAGATTATTCTAACATTTTACTACATTTTATTTAGCAAGTAGAGCTTTTAAAGAAGGAGATATGGTCAACATCTAATATTGCAAAGCAATAAATTATGTATTGGATTTGGCAATTCAAAGTATAGATTAAGCTTATTTAGAACAGTTTTAGTAGAGCAGTTGGGGTGGAAGCAGATTGTGATAAATCGTGATGTTAATGAAAAGTAAAGAAGTGGAAACAGTGAGTAGTAGCTCCCTTTCCCAGAAGTTTGATTTTGAAATGAAAGGAAAAAAGGGAGTGATAACCTAACAACACTGCCTATTATTATTATTTAAAAGTGAAACCTTCCTCTCTCCTACTCATCTTTCTCATCTTTTCCAATATATTCTCAGACTTATGTTACTTAGCTTTTTCTGTTTTATATTACATCTTTCTTCATTTTTATCTTGACTATAAAGTACAGTCATTTGGCCAAATAAGTTTACTTTGAAGCTATAATCCTTATTTTGTTAATTTTGTTGTTGTTGTTTCCATGTATCCATAAAAAG
Seq C2 exon
AAGTAGCAGTGGTAGCAGCCGCCAAGAAAGTCCTTCAGTTCCATCTTGTAAGGAAAATGAGAAGAAACTTAATGGTGAAAAGATAGAGAGTTCCATTGATGAACAGGTTCAGACTGCTGCAGATGATTCTCTACGAAGTGATAGTGTTCCATCTCTTCCTGATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF094945=Slx4=PD(18.6=72.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development