GgaINT0038291 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6332183-6332710:-
Coord C1 exon
chr8:6332594-6332710
Coord A exon
chr8:6332356-6332593
Coord C2 exon
chr8:6332183-6332355
Length
238 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AAAAATATATGTTTTTGATGTAA
3' ss Score
-6.48
Exon sequences
Seq C1 exon
GAAATGTGAGACTGCTGTCATGTCACAAAGTAAAGAGGCAGGTGACTCAAAACAGACTTACTCACCAGCGTTTGACAGTTACTCAGAGTCCTCAAGATCAAAGGTTCATGATCGAAG
Seq A exon
GTAAGAAGAGATTAGGTTTGGGTTTTTTTTCTGTTTACCTGCTGTAAATAAGAACTACATTTTGAAAATGCTTGCAAAGTAATTTTGAGACATGTTGTTCCCTTGTTTGCTTCTTAAAGAGAGAAAGTGGGTATTAAACCTTAACACTGCTGGGATGTTATTCACTGATGTAATGTAAAATAAATATGTCTAAATGCACAAAGTAGTATCTTAATTAAAAAAATATATGTTTTTGATG
Seq C2 exon
TAACAGTAGTACCAGCAGTCGCCAAGAGAGTCCTTCTGTTCCGTCTTCTAAAGAGAATGAGAAAAAACTTCCCCGTCGTGAAAAGATAACTAGCAGCATTGAAGAGCAGGCTCATACTGGTGTGGACGATTCCTTGCCGAGTGATAGTATTTTATCACTGCCAGATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACTGCTGTCATGTCAC
R:
TTTTCATCTGGCAGTGATAAAATACT
Band lengths:
284-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]