GgaINT0038291 @ galGal4
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6012359-6012886:-
Coord C1 exon
chr8:6012770-6012886
Coord A exon
chr8:6012526-6012769
Coord C2 exon
chr8:6012359-6012525
Length
244 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATATGTTTTTGATGTAACAGTAG
3' ss Score
3.36
Exon sequences
Seq C1 exon
GAAATGTGAGACTGCTGTCATGTCACAAAGTAAAGAGGCAGGTGACTCAAAACAGACTTACTCACCAGCGTTTGACAGTTACTCAGAGTCCTCAAGATCAAAGGTTCATGATCGAAG
Seq A exon
GTAAGAAGAGATTAGGTTTGGGTTTTTTTTCTGTTTACCTGCTGTAAATAAGAACTACATTTTGAAAATGCTTGCAAAGTAATTTTGAGACATGTTGTTCCCTTGTTTGCTTCTTAAAGAGAGAAAGTGGGTATTAAACCTTAACACTGCTGGGATGTTATTCACTGATGTAATGTAAAATAAATATGTCTAAATGCACAAAGTAGTATCTTAATTAAAAAAATATATGTTTTTGATGTAACAG
Seq C2 exon
TAGTACCAGCAGTCGCCAAGAGAGTCCTTCTGTTCCGTCTTCTAAAGAGAATGAGAAAAAACTTCCCCGTCGTGAAAAGATAACTAGCAGCATTGAAGAGCAGGCTCATACTGGTGTGGACGATTCCTTGCCGAGTGATAGTATTTTATCACTGCCAGATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACTGCTGTCATGTCACA
R:
TTTTCATCTGGCAGTGATAAAATACT
Band lengths:
277-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]