BtaINT0037344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007243 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr26:25281804-25286776:+
Coord C1 exon
chr26:25281804-25281937
Coord A exon
chr26:25281938-25286347
Coord C2 exon
chr26:25286348-25286776
Length
4410 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TCTCAGCTCCTCTCTTACAGAAA
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTTTTGTCTTCAGAGCTGAATATGTATGAGTCACAGAGCCAAGAATACAAGTATGAGATCGAAAAACTTAGCAACGAACTGCTGAATTTAAAGAAGAAATACCTTGCTCAGAAACGTAAAGAATACATTCAGAA
Seq A exon
GTAAGAATTAGTCAAATGTTCTAGTTTTGTTGTGCCTTTTAACTGCTGATGAGAAAAATAATTGTGGACAGCTACAGAGTCACAGACCTCACTGGGGTAAACAAAGTCAGGGCTGAGCAAATAACTTTCTGCAGGATCACCCAGTGGGTTGTTGGCAGAGCAAGATGGGTGTCTTGTCTGACTTGACCCCTCCTTAGGACCCTAACAGGGATCCATTAATATCAGCTCTCTGGTGGACCTCCTGTGGAGCAGAGGAAACCTAGTGTGATGTTTTCCCCCACGTTGTTCTCACGGTTTGGGGCTGTGCCTGCAAAGGAGGTTCACAGTCACCGTGGCATGGGCTGAAGCACACTCACATTTAAAACCACAGGTAATTTTGTTAAGAGGTCTGGGTTTGCTAAAGCTGTGCTTTCTAATAATGTAGCTCAGTTCAGTTCTGTTCAGTCGCTCAGTCGTGTCCGATTCTTTGCGACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAGACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCTTCCTGCCCCCAATCAGAGTCTTTTCCAATGAGTCACCTCTTCGCATGAGGTGGCCAAAGTATTGCAGCTTCAGCCTTAGCATCAGTCCTTCCAAAGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCCGTTCTTCGGCACTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACGATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTGGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCAAAACAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGTTCAGATGCCATGATCTTCATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTTTCATCTTTCACTTTCATCAAGAGGCGTCTTAGTTCCTCTTTACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAGTCTTCATTCCAGCTTGTGCTTCTTCCAGCTGGACCACTGTAATTATGAGCAGTTCACACACACATGGTTTTCACCTATGTTTTAGATAAACTGTTTCTGAACCATCTCTCTGTCTAGTGCCTGACTTCTGTATCTGATGTAGGGTATCAGCATGGGACGCCTTTCTTCTAGGAGATGATATTGCACGTGTCAGGTGAACATTTTGGGTTTCAGTATGGCTATATGCCCAAGAACAAATGTTCTCTTTACTTTGTTATTGTTTTCCTAATCCTGGGGTGAATGAGGGGACCCAGATGAATCTGTAGGTTTGAACCTTGGCTATATGGCATTGCCTAAGTCATAGAGTTCATTCTGCAGAGGCTCACACTGGGAGTTGAAAGTCAGGCTTGGTGTGTCATCCACATGGACGTTTCAAGGATATGGTGAAAGAGGGTCTGAATGCATCCCCTGTGATTCATTAGTGGCAAATAGCTATTTAAAGTAGCTAGGTGCAAATTCATTTGCCAGTAAAAATCCACCCTTTTTGTAAATCAGAATATCCCCTCATTCCACATTTAGATGACAGTTCCTGGTTTCCTTTGGCCTTTTGATCCTCTCACCACACACACACACAGTTTTCTGGACAAAGAGAACATACTGACTGACAGAAGGATGCCCCTCTGATAGCTCTGTTCAGTTCAGTCGCTCAGTCGTGTCCAACTCTTTGTGACCCCATGGAATGCAGCATGCCAGGTTTCCCTGTCCATCACCACCTCCCAGAGCTTGCTCAAACTCATGTTCATCAAGTTGGTGATGCCATCCAATCATCTCATCCTCTGTCATCCCCTTTTCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCAAGGAATCAGTTCTTTGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATTAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTTTCCGATACCACTGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTCTTTAAGGTCCAACTCTCATATCCATACATGACTACTGGAAAAGGCATAGCTTTGACTAGACGAACCTTTGTTCGCAAAGTAATGTCTCTGCTTTTCAATATGCTGTCTAGGTTGGTTACAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGATAGCTCAGCTCCTCCCAGTGGCCCATCCACTAGAACTGTGCTGCCCCAGGCAGTACACCACTTGTGGCTATTTATATAAAGTGAATTATAATTAAATCAAATTAGAAATTCAGTTCCTTAACTGCACTAGTCACATTTCACCTACTTAGTAGCTGTATGTGGCTAGTGGATGCTGTATCTGGCAGGCCAGGTACAGGGTTTTTCTACTTTCTATCATGGAAAGTTCTAGTACCCTGCTCTAGACTCTCTGCTTTTGCCTTGATACTTATTCCTTGTGATTGATCTCTCCAGAGGGCATCAATGGTGGTTCCATTTAGTTGGGATCCATAAACTGGAGGGAGACAGAAAAATATGAGTTCTTAGGAGGAGAACAGCAGGGAAAAAAAAAAGATTAAGGAGCTGAAGGAAAATATGACCAGGCAAGAACAAAAGTGCTGAGATGGTTTAGACTGAAAGGAAGAAGGCTGAAGGGAGTCATTAGGATGGTCTATAAATACATTAAAAAGATCATGTAAAGGAGACATTATTCCCGTTAGTCGGCTTAGGTCAGGCCAGAAGCATTAAGCTTTGGTTCCTTTGGAGAGGAAAATTTAGGTTATTTGAGGCAAGAGAGGTCAGGAGGAGGGGGTCCTTGCCTGCATCTAACAACGGTCAGGAGGTAGACAAGTTGTCAGAGTACTTGAAGGCGTCTTCTTTGCTGGATCCACTCAAGGCTGAAGCTTTTGTCCTATTTATGGAGGATGATTTTTATAATAATGAAATCAATTCTGCTAAGAGACAGCTGAATTGATGAACCAATCCTCTACAGATTCTTTCCAAATGGAATAATTTAGAATAATCTCCACGGATATTCTCCTCACACATACTCTTTATAAAATAGCAACTCATATCATTTTTACCTTTTTGCTTTTTTTTTTTTCATTTTTCTCAAACACCATTTTTTCATGCTCCAATCCTGACCTATATACCCCCACCCACCTATCCTTGACTCCCCTACTCTATACCCCAGGCTGGCCTGGAGTCTGCAGTACAAGTCAGATTGTTTTGCAAAAAGTAGAGTTTTCTTCTCTGAAGTAACTTATTTCTAGTAGTCAAATCTAATTAGTTTTAATCTTAGTAGTTTGCTCAATTTTTATTTTGAAAAAGGGACTCCAAAGATGTTTTTTATAAGACCCTAATTATACAATAGGTAATCTATATAACTGTAAGATACTTCTGCAGGAAACCTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGGAGGGTCATTTAAAGAAGATCTATATAGAAGATATATTGTAGATTTTAGGGAGTTTCTTCCTTTATCTATTGCCAAATGTACTATCTTATTTATATTTCTCAGTTTTTCCTGTATTTTAAACTATTTCTAATAATAACTGCTTCTCATCTAAAGTTATAGGAAAATTTGTATTTTATTAATGTCCAAGTTTGGTGAAAATGCCCTGTGTGTGTGTGTGTGTGTGTGTGTGATAAATATTTATAAGTTTCCACTGAAACGGAAACTTTTATAAAAGTTGATAAATGATGAATTAGTCATTATAATTGAGCCAAGAGAAAGATTCCTCTGACTGATCTTTGGAACTAAACAAATGCTTTATAAAATAGGAAGATGATTACAAGTCAGGAGCCTCTGGGCCCCAGCGCTTGAGCTATAATGAGGCCTTCTATCTGTATTTAGATCAACATTAGGAAGGCATGTTTAATTGTGTCTTTCCCTAATTCTATGTGTTATCAGTAACACCTAATTACATTTAAACCACCACTTTGTCTCAAACTGGAAGCTTTGATCAAAGCAGTTTTTAGTGGTTAACTCACCCTAAGAACTTAACACCAAACTTAGAAAAGGAAAAAGAAAGTTAACTCTCAGCTCCTCTCTTACAG
Seq C2 exon
AAACAAGGACAGAATAAGCATGGAGGACACCTTTTCAATGGCCAAACCAAGTGGCCCTCGTTTTACTGGGGGTGGATTTCCCCTTAGCAAGTCATCCAAGGCGAAGTCCTAACTTGAAGCTGCTGGCTGGGTCCTTCTGAACAACTCATTGGAATTCACTCTGAAACATTTTGGAGGAATCTCTTGGAAACCCCTTGGATCATGACATTTAGGGAAATCAGTCCTCGGATTCCAGGATGGAAAGAAATGCAGAACTATTATAGTCCTGTACATAGAAGAGTGATGACTTTCTATTTAATCCACATGGATATTAACAGAGTGTAATTAAATCTATTCAATCAGGTTGAATTATATCAATTCAACCATTGCATGAAGCAGATCTTTTGTTACTACCACATTGATTTATTTTGCAATGCACCACATCTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007243:ENSBTAT00000009529:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]