GgaINT0044533 @ galGal3
Intron Retention
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25779145-25783903:+
Coord C1 exon
chr6:25779145-25779278
Coord A exon
chr6:25779279-25783524
Coord C2 exon
chr6:25783525-25783903
Length
4246 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGG
5' ss Score
4.99
3' ss Seq
GTCTTTGTTTCTATTTCAAGGGA
3' ss Score
8.73
Exon sequences
Seq C1 exon
ATTTTGTCCTCAGAACTGAATATGTATGAATCACAGAGCCAAGAATACAAATATGAAATTGAAAGGCTTGCCAACGAGCTTCTGAATGTGAAAAAGAAATATCTGGCTCAGAAACGCAAGGAACAACAGGCCAA
Seq A exon
GTATGGGAAAATAACAGTTTTGTCTATACAATGTTTTGCATAAACTTAAGACCCTGCTTTATCCTTTTGATCAGAATGTGTCCAAATTTGACTGAAGTGTTAGAGTTTTGTTGCCTGACTTTCCTGATGTTTTCCTTTATGCTACTTCATATTACTATTCTGGTCTAGATTTACCATGATCTGTGGTCATGTCAAGAACATCCAGCAGTGATACTTCTGATGCATTCTGCAGTCCGGTTAAATTACCCATGCCAATTAGATGATGCACAGAAGATGTGGATTGGTTTCTGTCCCTCTCATCTAATGAGAGATCCTCAAATATTATGGAGACCTCAGTGCACTTCATGAGTTGTAATTAAGTGAAACAGCATTGTATATGGAGGACAACCTTTCTTTGGGTGACAGCTACATAATCCTGGTATAAGAGCGATGTCATTATTGTTACCAACACGTGGCAGCTGTGACTATCCCCTTTTGGCAGCAAATATCATTGTCAGTGGTTGCAGAGAAGAGCACTCCCCAGCCACTTCTTGTTTAATTCCTACATGAGATGGAAGGAAAATGGAGAGAAATGATGGAAATGGAGGAAAGTGAGCAATGCTCAGAGTCTGGCTTTGTCAGATGTCTTACCCTTTCAAGGGGAGAGCCTAAGAACTTTCCTGTAGGTGGTAGTTGTCTCTCCACAACGAGCAGCGGTTTGAGATTACCTTCCTGCCAGTCTCAGTCCAAAATTAAGCATTTGGCTGCTCCTCCCAGTAAAAAGAAAACAATTAGGATCTTAGTTGCCCATTTTCAAGCCTATTAAAGTGACCTAATTTGCAGAGGCTGAGAGATGAGGCATTCTGATCATGAATCTCCAGGCTGGCACATAACTATTAGTCACTTCTGAAAATTGAGTTATGGGAATTTTCCTCCTAAAAATAAGTTACTTAGAAAGAAGTTTCTTAGATTTCTGCAGTTGGATGACATGACCTATTACCAATTTTATCTACGTATGTCTTTCGTCTTTCCATCCCTTTTCTCAGCTTGTCCCTTCCTCACACATCATAGCCAACAATACTTTATATTGCTGAATATAATTCAAAGCTGGCAGTATCTATTTCTTCCTTAATCATATTTCAGGCAGCAAACAGTTTTGATGACTGAATTAGCGGTGATAAACAGTGACTTTAGTCTATCTGCAAATTGCATAATGTTACCTTCGTGTTTGAAATTAACAATTGTGCAGTGCTAATGGCCTTCCTGGAGCTTTAGGATCAATATGTGAGGTTACCATAATGCCTGATAATCCATTTCCAGCAGCTAAGTATCCTCTTCACAGTAGTTTTAATGTTTCCATTTTGGACCCTGGCATCCAGTTTCTTTCTGATCATTAGTTGAGAAGAAACGCACCAATGTTTTGTTATTATGTTGTACCTAGAATTAATTTCTGTTATGACCACTGAGAAAACAATTTGTTAGAGGCATAACTGCATTAAAGAAAACAAAAACAGTGTGTGAGGGGATGTTGACTGAACTTGTTAATTGTATGCAGCAAATGGAATTTTGTGGTGTAGGTCCATTAATGATGGATTCATTACACTGCTTATAGGTTCAGGACAAAGTTATCTGCTGTTAGTGCAGATTGTCAGGTTGTTTTTCTTGTGCATGAGTACAGCTATCGTCCTGTGAGCACGGTGTCTTTGTGACATCTGTGTTTTGGAAGTACAGTCACATGCTGTTGGTGGTGCTTCTGCTGGACAACTGTGTCTCATTCCTCCCGCCTCCGGCTCAGAAGCTACCAGCACTGTGCTGTCAGCCCTGACTCACACTTCCCTTGCATAGTGGCTGCTGAAAGGCAGCTGGGTGCTGTGCCTGTGCTCTTCTCTGCCCCTCATTGTTTTGTTCCCCAGAAGAAAACTGCTGGGCCACAAGCTGCTTTGAAGGTTATGTACACCCAAAGGCATAAATGGATGTATCAGCCATGGATAATTGCAAGTTCTGTATCTCTAGATTCCTTTTTGCGTTGCCCGACAGCAAAGGAAACAACCTTGTTATACTGCCTTCCTTCTTCAAACTGCTAATTGTGCATGACGTGTCTTTTGCTTTCTGCAATAGAGAAAGCCTGTTCTACAGCCAGATGCTTCCCCAGGGAGTCCTTCATCCCTGACGTACAGCCATTCCGTGTTGTCGCTGCCTCAGACTGCTCTGTACAGGCACAGCCTGGTGTGTAGATGCTAACCAAAGAGTCAGAGCCAGTTGATTCTTAGAATCTCAGGTTGCTCTAAATCCCAGCTGACACAAAACCACTGACTTGATCTCTATCACACTGGATAATGTTAACACCGTGTCTGAAATAAATGTGTCTGCTTTTGCTAATAAAAAGAGGATCCTGTCAGGACAATAGCATTAGCAGCCTTATTGATTACACTGGTATGAAAGAGAATTAATACTCTCAGATAAACTCACTCAAAGGTATCATCTAAAGCTTTTATTGATTTCCACAAGACACTTCTGGTTTGTGATTTAAAGTCTTGATATTGAACTAATGCAGCTTTCCATGGGATGCTGAAGGAACACGGTGAGTGACAATAGGAATTTATCTTCACTTTATGTTCAAGCTGAAAATATCAGTTTCAGATTTTCTGAATCTGAAATCCTCCTTTTCTTTTCTCTGATTCTGAATGTTTTCTTTCTTAGATGTCTTAGGCTTTCTTTTTCTAACTCCATTTTAACCTCCTTCTTGTATGCTTTCTGCTTCATTACTTTTTCTAGTTGCTTTTAGCACCACGGTTCTAGTTTTATCTTTGTAAAGATTGGTGAGAAAATGCAAAGCTTAAATCCACACCAAAGACCTGATCCTGCAGTCTTACCTATGTAAATAACCATGCTGAGGAATGTCAGTAGTAGCTGGGAGCTTTTGCACATGGCTGCTTGCACATTAATTCTGCATTAATATATTACAGTATTCTGCTGCACAGAATGTTCCATATTGATGAGCACATCTGTTGGCTGTCTCCATGGGAGCGTGAAGCCAGGGCGAGCACGGACTCGGGATCATTTTCTCTCCCCAGATTTGGAAGCCCACTAGTGAGATAGGATGAACCATCTAAATGTAGCATGTTAGCTCTTAGTGCTGTCAGCTGGAATGTCCATTAGAGCTATACTGGTATAACTAAAAATATGTACAAGTAGTTTTCATGGTTAAGTTCATCTGAGCTATCTTTTGCCTATTCCCCACCTCCATATGAGTTAAATTTGGAAAGAGAGGCAGAACTAGTCCTCCTACAAGGTTTCTCTGAACTTCCTCCTCTCCCCACGCAGACAGTAATATTTAAGGATACAAAAAAATATTAATTCCAGGAAGTGTTTTCTATTCCTTTACTGGGGACTGAATATGGGTGCTAATGGGTTCTAATGTAGAAGCTGGTTTCAATCACAATTTTATCTCTGTAAAATAGAAGTAATGGTACTGACCTTGTTTGTAAAGCCTGGAGGCCACTACTGTTGTGATAAACTAGTTCATCATAAAGCTCTACTTTGTTAATTTTAAATATCTCAGGACCTATTTCTGAAACATCCAGGTGTATCACCGTGAGTCTGAAATACTGCCCTTTGTAATTCTTCTGCCGTGCTTCCCTCACAAACCTCCTCAGAAGGGAACCAGCTAACCCCTGTTCCCTCATGCTAAGGCCATCGAATTGAAGCCTCCCTGGATCCTCAGACAGAGCATCTTCCTGGGGCTGCCAGTGTACCCACAGCACAGCGCTGTTTTTTCTGCAAACGTCACAGGCAGAGTAATTATCACTGGAACTCTCTTAAGACGTGAAGACAGATAACACTATTTATTCATTAAAATTCAACAAAGTAAAAGCATCTCCACATTGTGCCTTTGATGAATGTAGCTGTTTTAAAACAAATGTCTACTTGCTAGAATGGGTTGATTATTAGGAATCTGAAGTCACAAAGCCCATGCACAAACTTGCTCTAATGAGGTGCTCTGACCATTTTGGGGAGTGGCACTAAGCTCATTTGTTTCTGGTTTTAAATAATTCCAAAAAGCATCACTAGCTTTGTAATTAGATCCAAACAGACACCCAGCCATGGCGGTTTAGCCAAACAGGCTTTAATCAACAGATTTTTAATGATCTCTTGATACATGGTTGCATCAAAGAAACTTTGGAGGATGACAGTTTCTTTAGTTTGTAAACATCATTGGGCAGCAGAATGAAAAATGCATTTTCCTTGTCTTTGTTTCTATTTCAAG
Seq C2 exon
GGAGAAGGAGCGATCCTTGGCTGAATCGGAGTTCCCACACCTCAGATCTGACGTTCCTCGCTTCACTGGAGGGGGCTTTGCTCTCAGCAGACCCGTTCCCAAAGTCACAGCTTAGGAGTGGACTCGTCACTTTCCCAGTCTCTTGCTAAACCCTGTCTGTGCTGGATTGTTTGACAAATGAGAAGTTAGAAAGAAATTCCATATCAACTTTTGCTCTGAAATCACTGTATTGCCTTCAGGATTAATAAAGGCATTTTGTGTTAGAACTATCCTACTTGTGGTTTAGAAACAGAGGACTAAATCTGCATGTGCGATGCCAGCAGAAACCTGAACTGTAGAACTGAGTGGTGGAGACCATGCAGGTATCTCTTCAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417:ENSGALT00000013711:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]