MmuINT0030429 @ mm10
Intron Retention
Gene
ENSMUSG00000046585 | Cfap58
Description
cilia and flagella associated protein 58 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:48029079-48035379:+
Coord C1 exon
chr19:48029079-48029212
Coord A exon
chr19:48029213-48034660
Coord C2 exon
chr19:48034661-48035379
Length
5448 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TCATGTCCTTTCCTTTATAGAAA
3' ss Score
10.04
Exon sequences
Seq C1 exon
GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA
Seq A exon
GTAAGACTCAGTCCAACGTTCTAATCTCGTTATGCCTGGTATCTGATTGTAAGAAAATATGTGAAGGGCCTGGGACTGGTGACGCTTGCCTTTAATCGTAGCATTCGGGAAGCAAAGGCAGGCAGATGTCTGAGAGTCCAAGGCCAGCCTGGTCCACATAGTTTCAAGCCAACCAGTAGAACACTGTGAGACCCCGTGTCAAAAAAAAAAAAAAAAAAGTTTGATGAATTTCTCAGAGCTGCCAATCTCAGTAGGGTAAACTGAGTCATGGGTCAAGCAACCAGAAGTTCATAACACATTAAAATTCATGTCTTATCTGACATCGATTTCTCCTCTCTTAGAGATTTACCAAGGATTCACCAACACCTGCTCATTGGTGGACTGAGCATAGATCAGATTGAACAGGGCTGCTCGGCCATACACACTGTCTTCATGGCTTGCCAATGGCCAGGTCATAACTGCTTGCAGACTCAATCGCCAGCCTTCTCTGGGCTGAAGTGTACCCACAGTTAAGACCTGTGGAGGGGGCAGGGCTTCCTACGGCTTTCACAATGCAGTGGCACCGCTGTGATTGGGAACATTTCCTATGTTTTAGACATGACTGACTCTGAGCATCCATGTTCGTTGACTGACTAAGTATCTGTGGCAGGGCGTTGGCCCCAGCTCCTCTTCCAGGAGATAGAGATGTGAAGATGTAAATGCAGAGGTTGACATTGTGGGTTTGGGGTGCCTTGAATGCTGGGGAGCAAGTGTTCCCTTAGCTTTTTTTTATTGGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCCCCCACTCCACCCCCCACTACCCCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTAGGGCATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCGGATCCCTTTAGCTCCCTGGGTGCTTCCTCCAGCTCCTCCATTGAGGGCCCTGTGATCCATTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCGTGGCATAGTCTCACAAGAGACAGCCATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTTTATGCAATGGTGTCAGCGTTTGGAGGCTGATTATGGGATGGATCCCCACATATGACAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTGTGTCTCTGTAACTCCTTCGATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTAATGTGTTTAGCAAATTGTATCTTATATCTTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATAACCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCTTAGCTTTTTTTTTTTTTTTAATTGCTGTTCCCCTATTCCCAGGGAGCAGGGCAGGAGCCCAGTTGAGTCAGGAAGTTTAAAACTTGGTCTGATGGTGTGGCCTTGCCAAAACTGATGCAGCTAATTCCACAATGACTCCCACTACAGGCTGAAAGTCATATTTGGTATTTCATCTGCATGGACACCTCAGGGACACGCTGAAATATGGTTTGAGTGCATCTGCCCACAATCCGTTAGCAGCAAACAGCATATAAAGTAACTGGATGCAAATTCATTTGCCAGTAAAAAAAAAAAATCTGCCCTTCTCGTAGATCAGGATATTCCCCTGGTCCACATTTAGATGGCGGTTCCTCAGTGGAGTGAAATACTACCGTGATTTAGAGAAGTCTGTCTTAATATGTGGGTCTTGTGACTGACTCTCTGAGTCTGTAGTGAGATGGATTAAACATGCAGGTTCCAAGGTCCCATTTCTTGGTAGCTGGACTCAGCCTAAGCATTGGCAACTTGAAGCTTTGAGGGTTGTTTTCAGTCACACTGAAGTTTTAGAACCACGGGGGCAGGGGAGGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGAGACACAGAGAGAGACAGAGAGAGCGACAGAAAGAGAGACAGAGAGACAGAGACAGAGAGAGACAGAGACAGAGAGAGAGACAGAGAGGGAGAGGGGGTGGGGGGAGAGGAGACTCATAGGTCGTGGAACAGAAACAGTTGGTTAAACTAGGATAAAATATCATAGATCTGTTTTCCTGTGAGGGAGGTGTTAAGCTCTGAGACCTTCCAGTTTTTTTTTGAGCTCACATAGCCAGGTGTGGTGGCACACGCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAAACACATTTTGAACAATAAGTGATTCTTGCAATCATTGCTCCCCCTCGAATGTATACAGACATATAACCCTCCCCCTTTTTTTTTAATGAGAAAAGCTATCCATTTCAGGTCTACCTTCAGAACATTTTAATTTGCAGGCTGCATGCATGCTGTCTCCATTTTGTAATGTTAAGTAAAACATAATGCTTAGTTTTCAAGAAAAAAGCCCAACTAGACTCTGATACCTTCTATCCATGACGGGGCTCATCCCACTTGTCTCTAAGGGTCCCCACACCCTTAGAGTCACTTGGAGATCACTGGCATAGTTTACACAACTCCAAACAGCTAGCATGGTTAAACGGTTAAGCCTCTTTCTAGAACCAGTTCACCTCAGGCTGTAAGCTCATTGGCTTGCCCTAACCCCCTTTTCGAAAAACGTGTTCAAGTTGCATGTATTTAGTGTGAATGTGTGTGCATGAATATATGAGTGTGTGTGTATGTGTGTGTGTGTGTGTTTGGCTCTTTGAGTTCAAACAAATTTAAATCAAGCTGAAAATTCTGTGCCTTGCTTTCACCAGCTGCATTTAGAGTGTCGGGTAGCCGAGCACTCTTGGTGGCGAGCCACAGAATCTTTTTGTTTGATGCAGAGGTATCTGTCAGTTAGCCTGGCTCCTCAGGCTTGTCTTCACCTGTCCTCCCTCTCAGCCCCCTGCACCTGGCTTTGGTTTTACTGGTGGTTCCTTCCAGTCCAGGGAGGCATCCATAAGTCAGTCGTAGACAGGGAGAAGAGATCAGAGGAACACAGCAAAAAAGATTAAGGTGCTGAAGAAGATATGCAAAGGCAGAAACAAAAGTGCTGAGACGGTGTAGCCTGGGAGGAGAAGGCTACAGGGAGTCATTATAGTGGTCTATAAATACATTAAACAGATAATGCAGAGGAGACAGTATTCCCATTAGTCAGCTCAGACCAAGCCAGAAGCATTAAGCCTAAGTTCCTTCAGAAAGGAAAATCCAGGTCATTTAAGGCAAGGAAGTGCAGGGAAGGGGGAGTGAGGGCTGCCCGCATCTAACACCAGTCAGGAGCTAGACAGAGTTGCCAAGGTGGGGGAAGGAAGGAGCCCTCTGCTGGGTCCACTCAGAGCGAGAGCCTTTTGTCCTATGTGTGCAGGATGGGCTTCCACAGTGAAGAAATCAAATCTACCAGGAGCAGCTGAGTCGACCACGCGATGCTCTCTAGGTTCTTTCCAAAGGGACTAGTTCAGAACCTCTGCTGCCGGTGCGCTCTCTACACACACCCTTGAGAAACAGCAACTCGGATCACTTTTGCCTTTTGGCATCTTTCATTTGTCTCAGACACTCTTCACCAGCCATTAGTTCCACCCATATCCCAGCCACATCCATTCCACATCCCTCCATGGGATCCACCCACATCCCTCCATGAGATCCACCCACATCCCAGCCACATCCATCCCACATCCCTCAATGGGATCCACCTACATCCCTCCATGTGATCCACCCATATCCTTCCATGTGATCCACCCACATGCATCCATGAGATCCACCCACATCCCAGCCACATCCATCCCCCATCCCTCCACTGGATCCCTCCAGTCTTCACTTTTTATGCTGGTCTGTACTTTGCAGGATCAGGCTCTTTCCCTAAAGTCAATATTCTTTCCCCTAAGATCAATCAGGTGTAGTTGGCCCATCTGATTTTGGTCTTAGAGTTTGCTTAATTTTTACCTTTTATAATTCAAAATAGGTAACTTGTATGCTACCTCTGCAGGAAAGAGATGTGTGTGTTTGTATGAGTGCATGTATGTGTACATGCATGTGTGTGTATGTGCATGCATGTGTGTGAATATGTATATATGTGTATATTTATATGTATATATATATATATATATATATATGCGCACATGTGTGAATGTGGGCATATGTGTGTGTGCAGACATGTATGTGTGAGGGTGTGTGTGTGAAAAAGGGATCCATATAGAAAAATATATTGCAGATTTGTTTTAGGCGGAATTCTTTTTATTTTATTTTTTCTACCAAAATACCATCTTTTTTTAATCTCCCCAGATTTTCTTGTATCTTAGACTGTTTTCTAGTACATTCTGATACTTGTCTGGAGTTGTAGGAGAGTTTGTACATTATAGATGTCCAAATTTCATAAAGACACTGTACATGGAGTAAATATTTCTCACATTTCACAAGAATTTGGAAATGGACCAGGTGATAATCGACTAATTAGTCATTATATCTAAGCCAAGAGGAAGGCTCTTCTGACTGATCTTTGGAACTAAACAAATATTTTTAAAACAAGAAGGTAGTTTTAAAACAAGCCAGGAAGCACCAAAGGCAGCGTCTGGGCTGTAATGAGGCCCTCTGTCCATGTTTGGACCACCAGTAGAAGCAAATACTTCATATCTTATTGTCTCCCCATAATTCTATATGCTGTCAGAAAACGCCTAACGAGATTTCCAACTAGAAGCCCTGATCCGTTGTTTTCAGTGGGTGGCTCACCCTAGGAAATGACAGAGCATGAGACTCAGGAGAGGAACAAGGTGTGGGAATGCTAATCATGTCCTTTCCTTTATAG
Seq C2 exon
AAACAAGGACAGGATGTCGATGAACAACATCTTCTCAGAGACCAAGAAGTCCGTCCCTCGGTTTACCGGGGGTGGATTTCCCCTCCACCAGGCAACCAAGGTGAAGTTTTAACCGGAAGCTACTGGCTGGCTCAAGCTCAACAGCTCAGGAAATTTGCGCTGGAACATTGTAGAGGAATCGCCTTCAATCCCTCAAATCATAGCTAGATAGAAAAAGCCGGTGCCCAGCTTTTCAGAGTTGGAAGGGATGGGCAGCTGTCAGTGTCTTGTACATACAAGTGATGATGTCGTACCTGAAGCACGTGGACAGTAACAGACTGTGATTGCAGCTCTCTAATTAAGATGGCCCTTGGCATAAAGCTGATCTTTTGTTACAGTTGAATCAGCTGATTAGAAATGCACTAGATTTAGAAACTTGGGGTGGATGAAGCTTTGGGTATTAATTCCTCTATTATAGATATTTGAGCACTTGAAGGTTTTTGTATGCAAAAAAATATTTTATATGTTAAAAATGCAATGCATGCCCTCACATCTTATTAGTGAAAATCTATTTTAATTATTCCTCATTAGCAAGTGATAGCATGAGATAGGATAACAGGACACATGACTGGGATTTCAAAAAGTGTATATTGAGAGTGATTTCCACGTGGGACATCGTTCCAGGCCTGGGGTAGGAAAATCTGTTCTGAAGAAGAAATGCCAATAAATACTTCATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585:ENSMUST00000066308:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types