HsaINT0029156 @ hg19
Intron Retention
Gene
ENSG00000120051 | CCDC147
Description
coiled-coil domain containing 147 [Source:HGNC Symbol;Acc:26676]
Coordinates
chr10:106209829-106214848:+
Coord C1 exon
chr10:106209829-106209962
Coord A exon
chr10:106209963-106214179
Coord C2 exon
chr10:106214180-106214848
Length
4217 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTTCACCTCCTCTCTTACAGAAA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTTTTGTCTTCAGAATTGAATATGTATGAAGTACAGAGCAAAGAATATAAATATGAGGTAGAGAAACTTACCAATGAGCTCCAGAATTTAAAGAAGAAATACCTCGCTCAGAAACGTAAAGAACAACTTCAAAA
Seq A exon
GTAAGAATTAGTCAAACGTCCTAATTTTGTTGTGCCTATTATCTGCACATAAGAAAATATTTGGTGAACAGTCACAGAGTTGCAAGTTTCACTGGGGTAAACTAAATCACAGGGTAAACAAATGACATTCTACAGGTCACTAAGTTTGTATCAGAGCAAGATCAGTGTCTCATCTGATACTGAGTCCCCTCCTTGGGATTCTAACAGGGATCCATTAATATCTGCTCATTGGTGGATCTACCATGGAGCAGAGGAAATGTAATATGACTTTTCTCCCCACACTAGTCTATGGTTTGGAGATAATAATGTCATAACTATGTTTGCAAATGAGTTTCAAAATCAGCCTTGTACAGCATATTCACATTTAAAACCACATGTGCTTTTGCTAAGGGACCAGGGCTTAGTAAAGCTGTTCTTTCTAATGATGCCCCTGTACCACTATAACTACTAGCAGTTCACCTATGTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGATTTTTTTTTGTAGCAACAGGGTCTTGGTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAACAGTCCTCCTGCCTCAGCCTCCCAAAATGTTGAGATTACAGGGTGAGCCATGGTGTCCTGCCTGCCTAGGTTTTTAGATAGTTATTATCTCTGAACCATCTTCTATGTCTAGTGACTGACTTCAGCATCTGCTGTGGAGGGTTGATGTGACCTATTCTTCTAGGAGATGATAATGAAGAGGTGAGGTTAACATTTTGGTTTCAGGATGCTCCCATGTTGAAAAACAAAATTTCTCTTCACATTGTTAGTATTATTTGCCTGATCCCAGGGTGAAAATCGGGGCCCAAATGAATCAGGTTTGAAACGAACTAGTTTTGAAACTTGGTTTGGCTGCGTGACATTGCCAAAATCATCCAGTTAATCTTGTAGTGACTCACGTTATGGGCTGAAATTCATGCTTGGTACTTATCCACATGGACATTTCAGGGACATGGTGAAATATGGCTTGAGTGCATTTGCCTATGATTTGTTAGTAGCAAAGTTATATAAGGTAACTGGATGCAAATTCATTTGCCAGTAAAAGTCTGCCCTTCTTGTAAATCAGAATACTCCCCCGTTCCACATTTAGATGCCAGTTCCATGGTAGAGTAAAATACTGCTATAATTTAGATAAGTCCATCTTAATGTGTAGGTCTACCAGCTATCTGTCTGGTTCGGAATCACTAGTGAGATTTATTAAACATACAGGTTCCCAGGCCATATTTCCAGATACTTGGATTCAGCAGGCTCTGGAAACCTGCAATTTAATAAGCTTCTCAGGTGATTTTCATGCACAGTGAAGCTTCAGAACCACTAATATTAACAATGTAAATTAAATGAATGCTGGAGTGGAAACACTGTATTTTTCTTTTAGGATATCAAGGTTGTGCTCATAAAATGTCAACATGGTTAATTTCCACATGAAGCAGGTGTCTAACTCAATGGTCTTCAAGCTCTTTGATTGTGCACCCTTATCAGTAAAACTCTTTTTTTGAGACAGAGTCTTACTGTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACTCTGTCTCCGGGGTTGAAGCCATTCTCATGTCTCAGCCTCCCAAATAGCTGGGATGACAAGCATGCACCAACATGCCCAGCTAATTTTTTTTTTTTTTTGTATTTTTAGTAGAGACAGTGTTTTGTCATGTTGGCCAGGCTGGTCTCGAATTCCTGGCCCCAAGTGATCTGCTGGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCTGCCAGTAAAACGTTTTTGAACTTGCAGATCCCCTCATGCATATGCATATATCTTTTAAATAATTTAAAAATTTCAGAATAGTTTTAGATTTACCTGCAATGTATTTTAATTTATAAATTATATGCAGATACCATTGCCAGTTTGTAACTCTTAGGCATAATTTTTAAATTTTAAAGATAAAAGTATTAATAGATTTATTAATAGATACATAAAATAGTAAGAAATAATAAATTAATAGAATAGAAATGAAAGAAAATAATCAATTAATAAAATTAATAGAATAATATCTTCTTTCTACCCACAATGGATCATCTCATTCATTTTTTAAAGTTCGTACACTCCATTTGGAGACTGATGGTCTAGTTTACACTGTTATAAACAGCTAGCTTGGCTGTTTATTATCTTTCTAGAGCTGATTAATTTTCTTGCCTTGACCCTGGGGTTTGGCCTAGTCTTCTTTGACATTACTGACTGCTAATCTTGCTCCCTCTCCTGCCCCAAAGTTTGATGGACACAGAGAGCATGAGCTGTCCAGATATTGGCTCAGCCCTTCTTGATGGGTCCATCCACTAGCACTGTGCTGCTCAGCAGTGTGCCACTTGTGGCCAATGAGATTTAAACAAATTACTGTGAAATCAGTTCCTCAGTCTCACTAGTCACATTTCAAGTGCTTTAACAGCCACATGTGGCTAGTGGCTGGGTATAACAGAAAGTTCAATTGGGCAGTCCTAGAAAGTTCTAGAAAGCTCTAGAATCTTTGCCTTTACCTGTCCTCTTCTTGTCCTTACACGCTTATTACTAGTAGCCACTCTGACCTAGTTAGGGTTCCTTTGGTGGTTCCATCTACGTGGGGATCCATAAACTGGTAGACAGAGATTAGTTCATAGGAGAATAGCAAAAAAGATGCTGAAGAAAAAAATATGAAGAGGCAAGAACAAAAGTGCTGAGATGGTATAGACTGGAAAGAAGAAGGCTGAGGGAGTCATTATAATGGTCTATAAATACATTAAAAAGATAATATAAAGGAGACAGTATTCCCATTAGTCAGCTTAGACCAAGCCAGAAGCATTAAGCGTAAGCTCCTTCAGGAAAAGAAAATTCAGGTTATTTAAGGTGAGAGAGGGCAGGGGGAGGGGGAGTGATGCCGCCTCTAACACCAGTCAAGAGCCAGACGAGTTGCCAAAGTACAAGAAAGAATTTGTTTTGCTGGATCCACTCAAGGCTAAAGCTTTTGTCCTATTTATGGAGAATGGTTTTTCACCATAATGAAATCAATTCTGCTGAGAGACAGATGGGTTGGTTACCAATCCTCTACAGGTTCTCTCCCAATGGAATAATTTAGAATAATCTCTGTGGATGTTCTCTCCACATATGCCCTTAACAAAATAGCAACTCTTATCATTTTGTACCTTTTACCTTCTTTTGTTTTTCTTAATCACCCCTCTGCTCACACTGTGATCCCAAACTGCATCTGCCACTTCCCCTGTCTACCCTACTCCACATCCCCAGGCTGATCTACAGTCTGCAGTACCAGATTCTTTTCCAAAAGACAGTTTGTTCCCCTAGGGTGAGTCATTCATAATTGTCCAATCTAATTGGTTTTGGTCTTAGCAGTTTGCTTAATTTTTATTGTTTAACAGGGTTTCCAAAGGTGTTTTCTTTAAGACCCCAACTGTATGATAACTTGTGTAGATCTAGGTTACTTCTGCAGGAAACATGAATATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTAAAGGACATCTATATAGAAGTTACATTGTTGATTTTAGGGCAGAATTCCCTCATCCATTGCCAAAAATACTATTTATCTTCCCCAGCTTTTCTTGTATCTTCAACTATTTCTAGTAATAATGGTTGCTTGTCTAGGGTTACAGGAAAATTTGTGTTTTATAAATGTCCAAGTTTGATGAAGATACCTTCTGTGTAGTAAATATTTATAAGTTTCTACCAGAACTTTGCAATATAAAAGTTGATAAATGATGAATTAGTCATTATAATTGAGCCAAGAAAAAGATTCTTCTGACTGATCTTTGGAGCTAAACAAATGTTTTATAAAACAGGAAGATGATTCCAAGTCAGAAGTCACCAAATACATAGTGCTTGAGTTATAATGAGGTCTTCTGTTCATATTTAAATAAACATTAGGAGAGCATATTTTGCATTTAATTGTCTTGCCCTAATTTTATGTTTTTTTCAGTGAACACCTAATTAGATTTAAACAACTACCTTGTCTAAAACTAGAAGCTGTAATCAAAGTAGTTTTCAGTGGCTAACACACCCTAGGATTATCAAATGTCAAACTTAGACAAAAAGGATGTTAAGGAAGCTAACTTTCACCTCCTCTCTTACAG
Seq C2 exon
AAACAAGGACACAGCACCCATGGATAACACCTTCTTAATGGTCAAACCAAATGGTCCTGGTTTTACTGGGGGCGGATTTCCTCTCAGGTCAACCAAAATGACGTTCTAACCTGAAGCTGCTGGCTGTTTCCAGTTGAACAACTCATGAAATCTGCTCTGGGACATTTTGGGGGAATCTCAAAGTCCTTGGATCATAGAACTGAGTGCTGAGAATCCAGGATGGAAAGAAATGCAGAACTATCATAGTCACATACATATAAGAGGGATGGTGTTTTGTCTGGTTCACGTTGATATTAACAGATCATAATTCTCTCTGTTCAGTTAGGCTGACCTATTGCATGAAGCAAATCTTTTGTTGCTACCCCATTGATTGAAATGTACTAGACCTTAATTTCTTTATTACAGACATTGGTGTACTTGAAGGTTTTATATTTAAAAGTATTTTTGAAATGCAATGTGTCCCCTCTCACCTTATTAACAATAATCTATTTTAATTATTCCTCATTAACAAGTCATTGCATGAGATGAGAAAGAAGGACAAACTCTTAAGAATTTAAAAAGTGTTTTGAGAATGATTTCTATATGGAATTTCTTTTCAGGCCCGGAATGGGAAAATCTATTCCAAAGAGACACACTAATAAATACTTCATTATAAAAAATAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-CCDC147:NM_001008723:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)