BtaINT0038719 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98810170-98812823:-
Coord C1 exon
chr11:98812699-98812823
Coord A exon
chr11:98810258-98812698
Coord C2 exon
chr11:98810170-98810257
Length
2441 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CTTGTTTTGATTGTCATCAGAGA
3' ss Score
6.18
Exon sequences
Seq C1 exon
GAGTTCCAGGAACACATGTCGGGAGCCCAGCACCAGCAGCGGCTCGGTGAGATCCAGCACATGAGCCAAGCCTTCCTGCTGTCCCTGCTGCCTGTGCCCCGGGACGTCCTGGAGAGAGAGGACGA
Seq A exon
GTGAGTGGGGGGGTCTCAGAGGCTCGGGATGGTGCAGGGGAGGTGGTCTCACAAGCAGCCCAGGCATAGGGGACCCCTGATCTACCATCCACAAGGTCTTAAGGCATTAAGATCGCCCTCTCCCAAATACTTCTTCACTAACTGTGTGGCCTGGGCCCTCAGTTTTCCTTATCTGTAAAATGGCCTGGCGAGGGGTGTAAGGCAGGAACTCATGAACTAGACAGCCTCTATGTTTTTAAAGAAAATTTGTATTTATTTATTTCTGGCTGTGCTAGGTCTTTGTTGCTGCATGCAGGCTTCCTCTAATTGCAGCAAGTGGGGCTACTCTCTGGTTGTGGAGTACGGGCTTCTCGTTGCAGTGGCTTCTTAAACAGCAGGGCACAGATTCCCTAGAGCATGCCAGCTTCAGTAGTTGTGGCTCGCGGGCTTGGTTGTCCCATGGCCCGTGGGATCTTAGTTCCTGGATCAGAGGTTGAACCTGTGTCCCCTGCATTGACAGGTGGATTCTTAACCCCTGGGCCAGCAGGGCAGCCCCTAGACAGTCTCTTAAGGCTCTATCCAGGCAGGAACAGTTTGACCCCCTATGTGGGAGGGAATTGGGTTGTGGCACAGACCCCCCACTCCCCTGGCATATGTGCTGCCTCCGACCACAGGGCCTGATGGTCAGGTGGGACCTGCTCATCTCATGGGCTGAGATTAGAACGTCCCTGGGTTTTCTCCTTTCTTAGTCATGGGGGCTTGCTCCATTAGAAATGTCAGCCCTCCAGAGTCTGGGACTGGCTCTTGGGATGCTCAGTGGGCAACCACTGAGGCCTGCAGGAGCTGGGAGGCCTCAGCAGTGAGAGAAACAGGATGGCATTGGCTCAGTCCATCCTAGGGGACGTGGGCTCTGTCTCACCAAACAGCTGCCACTCAGCTCCAGATTTCCTGGTTTCTCAGAAGCATCTAGAAACCGATTTGTATGTGAATCTCCCAATTTCATGATGTTAATAGCTAGTTCAGAGTTAAAACCAGAACAGCAGACTTCCCTGGTGGTCCAGTGGATAAGATTTCACCTCCCAATGCAGAGGGTGTGGGTTCAATCCCCGGTTGGGGAACTAAGATCCAATGTGCCTTGTGGCCAAAAAACCAAAACATAAAACAGAAGTATTGTAACAAATTTAACAAAGACTTTAGAAAAATGATTCACACCCCCCCAAAAAAAAATCTTAAAAAAATAAGAAACGAGTCCTGTGGAGGCCAAATCAGATCCTTTCCCTGGTCGGATAGGCCCTGAGTCAGTGGTCAGGGGCTCCGCCATGAGGATTTACAGAGAGTCACAGCTTGCAGCTCCCTGGGTGGGGTGAGGGGACAGGAAGGGCCCTTGGGTGGCCTCTGCTTGCATTCCCTGAGTGACGGGGAGCTCTCTCTAAAGGCTGCGTCTCTGTTAGCTGGTCTCAGTTCGAGCGGAACTTCCCTGTGGCTTTGTGGGATGCTCTCCACCCTTAAGCCTCCCCTGGCTTGCTGACCTAGGAGTTACACTTGGGCCAAATTAGCATAAAGCCAGGAGAAAGGTGACACAGAGATGTTCCTTGCAGAGTTCATGCAGTGGTGAAAACATTTACTTGGAAATGATCTAAAATATCCCAAACTATGGACTTAGATCAGTTCTTCCACTTGGTAGGAGAACTAATAATATATAGGACAACGGCAGGGAATTGCTGACAATGTGGAAACATATGCCTGATGCAATGTCAGGACCAAACAGGATCCAAAATTGCATTTGCAGAATGAGTTTGACTATATAAAAATAGATCTTGCGACAGAATGCAGAGCTGTAGCCCAAGCTGTAAACAAGCTTCAGGTGGAGAAGATTCGCTACACTGCGTCCTGACACTGCTGGATCCTGACTCGGCCCCACCCAGAATGCGGCAGTCCTTCCTTTGGGCTGTCTGTCCTTCCCTCACAGTCAGAAGCTCTGAACTGATCCCCTGCCAGACCCCAGGGATGCCGGGGTGCTGTGAGGGCAGAGAGGGAATCAGGTCCTCTCAATCCACTGTGCACAGTGCTATGGCAGTGGGACTTTGGGGGTCCCAGAGCGGGGCCTGACTTAACAGGCATGGAGACAGGTCCTGGAATTGGGGAAGGGCTCAGACAAGCTCTGGGAAAGACAGGGCATCCAAACTGAAGGATAAAGAGTTCTCAAGGCCAGATATTTTCAGCTCTGTCACCTGTCCTGGTGGCCTCCTGGTGTCCCCAGTGCTTCTAAATCTCATCCCTCCCACCGAGTCTTCTCTCTTATTCTTAAGCATTCTTCTAGACGAACCCTAGAATCCATTTGTTAAGGTTCCAAAAAAACCCGATTCTGTTGGACTTGTATTCCATTTATGGAGCATCCGGAAGAGCGGCTGTCTTTCCAACAAGAATGCGGTGTCACACATACTTGTTTTGATTGTCATCAG
Seq C2 exon
AGAGCCTCCACCCAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAGCACCGCAGGACGCAGGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PD(40.7=26.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development