GgaINT0124559 @ galGal3
Intron Retention
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5718479-5719112:+
Coord C1 exon
chr17:5718479-5718609
Coord A exon
chr17:5718610-5719027
Coord C2 exon
chr17:5719028-5719112
Length
418 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTTTCTGTTGTCACTTCAGAGA
3' ss Score
7.78
Exon sequences
Seq C1 exon
AATTTCCAAGCCCACATGGCTGGAATTCAGCACCAGCAGCGACTTGGGGAGATTCAGCACATGAGCAATGTTTGTTTTGTTTCACTACTGCCTATGGTGAAGGAGCAGAAGTTGCTGGCAGAGAAAGATGG
Seq A exon
GTGAGTGTTGGTCTGAGGTAGCAAATACAATCCCAGCAAGGATCTACATGAGTTCCAAAATTCCTCAGTGCACCAAGGTGCCCCTGTGCTCCAGGATAACGTACAAAATCCCTCTTGCTTCTGAGGCCTTAGCCTGCTTTGGGCATCTTCCTTCCTGATAAAGGATAGCATTGTCAACTGTGACATGGTATTTAGTTCTTAATGCAGTAGGTCACATTGGAGAGTTGTTCTAACTGGTGCCTTTCTGTCAACATGGGCTATATTCCCTATGTAAGGGGCTGGAAAATGAAAAAGATAAATCCAAGAATGTAAAATTAGCGATACTGAGGAAAATAATGCTGAAACAAATTGCACATTGCAGTGTTCCATGGGGAATATAAAAAGTTATGACCTACAGATGTTTCTGTTGTCACTTCAG
Seq C2 exon
AGAGACCCAGCAGCGGTGGTGTAACACTTGTCAGATACACTTCACAGGGGATCTGATCAAACATCGCAGGACCCAAGAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789:ENSGALT00000034607:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=22.7),PF049887=AKAP95=FE(45.7=100)
A:
NA
C2:
PF049887=AKAP95=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACATGGCTGGAATTCAG
R:
CTTGTGTTCTTGGGTCCTGCG
Band lengths:
206-624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]