RnoINT0036655 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11403565-11404670:+
Coord C1 exon
chr3:11403565-11403689
Coord A exon
chr3:11403690-11404582
Coord C2 exon
chr3:11404583-11404670
Length
893 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTGCTTGCTCTTGCCGGCAGAGA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GAGTTTCAGGATCACATGTCAGAGGCTCAGCACCAACAGCGGCTTGGGGAAATGCAGCACTCGAGCCAGACCTGCCTGTTGTCCCTGCTGCCCATGCCTCGGGACATCCTGGAGAGAGAAACAGA
Seq A exon
GTAAGTAGGGGCTGGCAGAGGCCCATGCTGTGGCTTAGGCCCTGACCAGCCTGTCTCCAAGGTCTGGCCAGGAGATAAGCCAGCTGTGCATACAATTAAGTCCGTTCTTGATCATTGGTTTCTCCTGTCTTGATGACAGGTGTAGTGAATTTCCTAAGGTCCCTTCCAGGTAAGAACAGTGTGACATTCCAATGGAAAGGAGGGGAGCTATAATACAGAGCCCTGTCCCCACTGATCTGCCCGCTGCCCCCTAACCAGATGGTCTGAAATCTGCTCTACCTGGGATCTGGAACTAGCACCTGGTCTGAGAAGATTTGGTGGGAAGCTATAGGTTCTGCCAGGTCCAAGTGGGGGATCACAAGCCTGCAGGGCTGAGGCATAGCCTTGGACCCTGGAAGATAAGGGCCCTGTCCCCTGGGGAGCTGCCTCAGGTGGTTGCCAGAGCCCCCAGCTTTCCAGGAGGATCCAGGAAGTCTCACAATTGCAGAGTCACCATGATGTTCCTGGCACTTGGGAGGCTGAGACAGAGGGCACGAGAGTTTAAGGCCACTTCCTTACACAGCGAGATCTTGTAGTGAGTTGACTTATTCAGAATGACAGTAAACCCAGCTGAGGACATGAAACCCTTTCTCAGGCAGCATGGTTGTCTGAGTCAGTGATGGGCAATTCCACTGAGGACGAGGACAGGGACTCTGTCTTGGCTGCTCTTTGTTTGCCTGGCTGACAGGGAGCTCCGGTCCATTAGCTCTCACTTCTAGAAGAGTCAGGAGTCCTTTGTCCTTTTGATGACTAGGACCCTGGCCCCTCATATGCCCTAGTTGAAGTGCAGCACCCTTCCCTTCTGGAGCGCTCTAGGGGATATAGCATCATGCACTGCTTGCTCTTGCCGGCAG
Seq C2 exon
AGATCCTCCACCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACATGGGAGACCTGATCCAGCACCGCAGGACACAGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF127562=zf-C2H2_2=PD(46.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCACATGTCAGAGGCTCA
R:
CTTGTGCTCCTGTGTCCTGC
Band lengths:
206-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]