HsaINT0035575 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128170020-128176475:-
Coord C1 exon
chr9:128176351-128176475
Coord A exon
chr9:128170108-128176350
Coord C2 exon
chr9:128170020-128170107
Length
6243 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CTTTGACTGTTGTCATTCAGGGA
3' ss Score
8.2
Exon sequences
Seq C1 exon
GAGTTCCAGGACCACATGTCGGAGCCTCAGCACCAGCAGCGGCTAGGGGAGATCCAGCACATGAGCCAAGCCTGCCTCCTGTCCCTGCTGCCCGTGCCCCGGGACGTCCTGGAGACAGAGGATGA
Seq A exon
GTGAGTGGGGGATCGTGGAAGCTCTGTGTTGGGGGGTAGGCAGTCTCATCGGCCAGGGCCTGAATCTACCATCTGCAGGGTTTACCTTTGGGTTAAGCACTGCACCCCCAGCCAGGCCTCCTCACACTGTTAACTGTGTGACCTTGAACCTCAGTTTTCCCTGCCTGTAACATGGCTTGGTGACGGATATAGTACAGGAATTCATGACATTCTCTTAAGGTTCCCTCTAGGCAGGAACAGTATGACCATCCCTGTGGGAGAGGACAGGTTGTGGCACAGACTCTTGCCCCCTGTGGCATGTGTGCTAACCCCGCTGTGGGGTGACAAGGCTGAGGATCAGGTTCTTTTGTGGTTGGAGGTTAGGGTTTCCCTGTGTCTCCCCCTTTCATTGTCATGGGAGCCTGTTTAATCAGAAACTTCAGCCCTCCTGGGGTCTGGAACTATACTGGGGTGGGAAGGCCTGGCAGGCAGCCAGAGGTGCTTTCAGGACTCTGTGGGCAGTCATAGAGGTGTGCAAGGGCTGGGATGTGTCATCTCAGCAGCAGGACCATGTTAGCTAGGGCCACAGCGGGGACACAGGCTCTGTCTCAGGAGACAGCTGCTTCTCATCTCTGGATCTCTTAGTTTTAAGAAGAATCCAGAAATCCAGGTTTGTATGTGAAATCTCCCAATTTCAAAATGTTAACAGCTAGTTCAGAATTGAAACAAAACAAACCCTACGGAGAGCAAATCAAACACTTTCATAGGCTGGACGGTCCCTTGAGTCAGTGGTCACGGGCTCTGTCCTAATTTTACAGAGGTCACAATTTGAAGCTTCCAGGTGGGGCTGAGGGGACAGGAAGGGCTCTTGGTTGGCCTCCGCTTGCCTGCCTTGTGTGACAGGGGGCTCTCGCTCTGCAAGGGCAGGCTGTGTCTCTGTTAGCTGTTTCTCCCTTTGAGAAGAGCGTCCTTGAGTGGTTTTCTACTTGGTTGAAATAATCATAAACACAGGAGAATGATGACTCACCAAGACGTTCTTTGCTATTAGTATCATGATGAAAAAATCTAACGGGAAATGATCTAAAATACTCGAAAGTAGGGGACTGGTTAGATGATGAAAAAGCCCGTCCAGCTCGTGGAACAATGAATAAATAGAATAACTGGAGAATTTATAATAATGTGGAAAGGTGATGCAATGTCAAAGTAAAACAGGATTCAAAATTGCATCTGCAGAATGAGCTTGTTTGTGTAAGAATAGATCTTGTGACACAGAAGAAAACTAAAAGGACATACGTAGCACAAGCTGTTAACAAACTTGAGGTGTCGGGGATTCATCAAACCCTCTCCCAATGTTATCTCTCCATGAAGTCTTCTCTTGAATCCTACTTGGCCCTGAGGCCATCAAGAACATTATGGTCAGGCGCAGTGGCTCAGGCCTGTAATCCTAGCACTCTGGGAAGCTGAGATGGGCGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCCTCTGTACTAAAAATACAAAATTAGCTGGGCATGGTGGTGCATGCCTGTGATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTTCAGCCTGGGTGACAGAGAGATTCTGTCTCAAAAACAACAACAAAAATTTAAAAAGTCCCTCCAGTCCCTACCTACGACCCCCTCACCTTGGTCCCCAACACAAAGACATCAATACTGTCTTCCTGCATCAGTGGGGGTTCTTCGCGGTTGTAAGTGAAAAAAATTCTAATTTCTATAAGACAGAAATTAGCTTGAGCAAAAAGGAACAATGTTTCTGGCTTAGGTTAGTGGGAATATAAGAGATACAGCTGGACCCAGGGGATACCATTTCTTAGAGAGGCTCCATCTCTCACTACAGTGGGCACCAGGTACCCACAGCCCCAGCCTCCCTGCACAGTGACTTCCAAGGAAGGGCAGTCACCTGTGTCTGCGGTAGCAGAACAGTTTCTAGTGGAAATGCTGGTTAATCTGATTGTGGTCACGTGCACGTTTCTGAAGCAATCCCCTGGCCAGGGATAAGGTGTTCTGACTGGCTAGGCCTAGGCAGGCCAGCTCTACCCAAACCACATGGAAATACATTTCCCCATGGAAGGCAGGGGGGTGTTCCCAGGAATGGGGCTGAAGGCTGGATCCCAATACCCTAGCTGGTGGGGGTGCCCGTCTCCTCCCTCCTCAAAGCCCCCAGGGCAGGTGCTGTGAACTAAGCCCTTGCCTACCTTAGCTATTTCTTTGTTTTTTTTTTTTGTTTTTTTGTTTTGTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCCGCCTCCCGAGTAGCTGGGACTACAGGCGCCTACCACTAGGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCTCTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGCAAGCCACCATGCCCGGCCCGCGTTGGCCGTTTCTGGGCAGCCTCAGACGTGACACTGGCACAAGGTGTCTGCCTGTTTGATGACCATGTTCTCTCCCCACCCCCTTTCTTCATTTGTTGTGTTTTTCTCTCACAGAGATCAAAATGCACATTGAAAAATAGAGCCAGGCTGGCATGGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGTGGGGGGATTGCTTGAGTTTAGGAGTTCAAGACCAGCCCGTCATGAGACCTGTGTCTCTGTAAACTATAAAAAAATTAGCCGGCCGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCATGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCAGGAGGCGGAGCTTGCAGTAAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATTAGCCAGGCCTGGTGGCATGCACTTGTAGTCCTGGCTACTTAGGAGGCTGAGGTGGGAGGATTGCTCGAGCCCAGGAGGTAGAGGCTGCAGTAAGCCTTGATCATGCCACTGCACTCCAGCCTGGAGCAAGCTGCTTTAAAGTCTGATTTTGTTGCTTGCAGCAGTATTAAGAAGATTTTACTGAGGACAGTAAATGTCCCTAAATCCTAAAATCTAAAACCTGGTACTCTCACTGTGTGGCTGATGTGCCTTTTTTGACTACAAAAAAATTTTTTTTTCTGATTTTAAAAATAATTCGCTCATTATATAACGTTTTGAAAATACAAGGACACAGACACATGAGAAGATAAAAATCACCCATAATCCCATTACCCAGAGATAAACACTGTTTACATTTTGACCTAGTTCTTCTTGTGATCCTTTCTGGATTTATACAATCTTTAAAAATAAAAATCGGAATCATGCTACATGACAACACGAACACTTTCTGTCTCTAAGCAGCCCTCCCCAGCAGAGCTCTTACAGGGCTTTATCAGTGGACATGTGTCCCCTAAAATTTATGAAAACTTGTGTATTTGCATATTTTATAGAGAGTCCTTATTTTCGCTGAGTGAGACACTTTTTTTGGTTTTTTTTTGAGAGGGAGTCTCGCTCCGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCGTCTCCCAGTTCAAGCAATTCTCCCGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGTGCCTGCCACAACGCCTGGATAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCCTGACCTCAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCAGGGTTTTACATGTATTTGGCTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTGTCTCACTCTGTCACCCAGGCTGGAGCGTAGTGGTGTGATCACAGCTCAATGCAGCCTCAGAACTCCTGAGCTCAAGGAACCCTCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCAGCGGTATGCCCAGCCTTGGTTTAAGAAGCTGCCTACATAAAGGATACACTCTGGCCAGTGATAGCACAGCCCTTGTCATTGACATTTGTTTGCTTTTTAATTTTCTTATATCTTTCAACATGTAGAAGTTTTAAATTTTTATGCAATCGGATCTATCAGTTTTTTCCTTTATGATTTCTGGCTTTGATGTTATATGTTGCAATGATCTTTCCCAACCCAAGATTAAATAGTTGCTCTCCCCTTGTAAAATAAGTATTATTTTATTTATTTATTTATTTATTTTCTGAGACGGAGTCTTGCTCTTTTGCCCAGGCTAGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGTGCCACCACACCCGGCTAATTTTTTTTTTTTTTTTGTATTCTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTCTTGACCTTATGATGTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCCTATTTTATTTTATTTTTTGAGACCGGGTCTCTCTCTGTCACCCAGGCTGGAGGGCAATGGTGATCTCGGCTCACTGCAACCTTAACCTCCTGGGCTCAAGGAATTCTCCCACCTCAACTTTCCAAGTAACTAGGACTATAGGTGCACACCACCATGCCTGACTAATTTTATTTTATATAGAGACAAGATCTCACTATGTTGCCTAGGCTGGTCTTGGACTTCTAGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCGACTGGCCCCCTTTTTATTTATTTATTATTTATTTTTGAGACAGCGTCTTGTGTTGCCCCAGCTGGAGTGCAGTGGCAGTCATGGTTCACTGCAGCCTCGACCTCCTGGGCTCAAGCAATCCTCCCACCTCAGCTTCTGAGCAGCTAGGACTACAGGCATGTGCCACCAAACCCAGCTAATGTTTTTTATGTTTTGTAGAGATGGGGTCTTGCTGTGTTGCTCAGGTTGGTCTCAAACTCCTGGGCTCAAGCAGTCCTTCTGCCTTGAGGACTGGGATTACAGGTGTGAGCCACTATGCCCGGCCTCCCTTTTTAAAGTATATGGTTTTTATTTTTATGCCTGAATCTCTGGTAGTTCAGCTAGAATTCATTTTCAAGTAAGGTAGAAGGTGGAAGCAGAAGGCGTTTCTTCTCCAAGTAGACAACAAATTGTTCTGACATAATTTGTTGTATAATCTATGCTTTTCAATACCAATTTATCAGAAGCAGAATTCTTTTTTTTGAGATGGGGGTCTCACCCTGTCACCCAGGTTGGAGTGCAGTGGCGCTATCTTGGTTCACTGCAACTTCTGCCTCCCAGGCTCAAGCCATCCTCCCACCCCAGCCTCCTGAGTACCTGGGACCACAGGTGCATGAGCCACCATGCCTGGCTAATTTTTTGTATTTTTGCTAGAGATGGGGTTTCCCCATGTTGCCCAGGCTGGCGAAGCTGAATTCTTACCAATATTTGAACCTGTTTAGGACTTTCCATTCTTTCCCACTGATACACTGTCAGGATGTACATCACACTACACAGTTTTATCTATTGTAGCTTGTGGTTTTCATTTTAAAGGTTGGTATCCCCAGTGCTTCATTCCCCTTCCCCCTAAAGTTTCCTGGGTTATTTCTGCTTAAGTACTCATCCAGATGAACCTCAGAACCATTTTGTTAAGCTTCCCTAAGAGATCCTGTGGGAGTTGCTATTGGAATGGATTACACTTATGGAGCGCTCTCAGACAGCTGCTGTCTTTCTGGCGTCACATTGTACTTGCTTTGACTGTTGTCATTCAG
Seq C2 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.230
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development