BtaINT0038722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98807189-98809364:-
Coord C1 exon
chr11:98809215-98809364
Coord A exon
chr11:98807259-98809214
Coord C2 exon
chr11:98807189-98807258
Length
1956 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
CCACACTGCTGTGTTTCCAGATG
3' ss Score
7.51
Exon sequences
Seq C1 exon
CTGAAGACACTGGAGAAGGATATAGCCGGCCAAGACGAGGACCACTTCATCACGGTGGATGCTGTGGGCTGCTTTGAGGGCGATGAAGAAGAGGAGGAGGATGACGAGGAGGAAGAAGAGATCGAGGCTGAGGAGGAATTCTGCAAGCAG
Seq A exon
GTGCTTGGGGAAAGAGGGCATGGAAAGGAGGCTGGAGGCTGGACTCCCAGACCAGGAGAGACCTCCCCCCACCTCCCAGGGGCCAGGAGACGCTGTGCTGGCATTTGCAAGCACAAAGACATGCCTCAATCTAGTATTATTAGGAACCGGTTTCAACATGACAGTGTGTAAATATGCATCATGACGACGGTAGGGTGGCAGGTGAAATACGCAAGGTCTTGAAAGCCTACTTGAAATTTTTTCTTGTGTTGCGGAAGAGAAAGGCGTCCTAGGCCAAGAGAATAGCATCGCAGAGACATGGAGAGGGGAGCTACGTGGTACATATGGGAAAGTCCGTGAAAGGTGATGATGGTGATGATGATGGTGGCGAGAGCAGTCAACTTTATTTTTTTTTTAAGTACTTATTATCAAGTTCTTTACAGAGAAAGCTTGCCAGATTGCCCAATTTTTTAAATAATTTTATTTATTTGTTAATGTTTGCCTGTTCTGGGTCTGCATTGCCGCACGGGCTTTCTCTAGTTGTGGCGAGTGGCGGTTCCTCTCTAGTTGGGTGCACAGGCATCTCACCGGAGTGGCTTCTCTAGTTGCCGAGCACAGGCTCTAGAGCGCTAGGCCTTCAGTAGTTGTGGCACGCGGGCTTAGTTGCTCCTCGGCATGTGGGATCTTCCTGGACTGGGGATTTTTTATCACTGAGCTACTAGGGAAGCTCTCAACACTTTTTTTTTTTTTTTTTTGCCATGCCACATGGCTTGTGGGATCTCAGTTCCCTGACCAGGGATTGAACCTGAGCCATGGGAGTGAATGCCTGGAATTCCAACTGCTAGGGTACCAGGGAACTCCCGCAGTCAACATTTGTTGAGCGCTTACTATATGCTAGGCGTGTAACCAGGCACTTTCTTGGCAGAGTCTCACCCATTTGGATGCGAGGAAGCGAGACTCCACAGCCTGTGCTTAGAATACATCAGCTCTGCTGTCTCCCATGAGTGAGGAGCTGGAGGAGCTTTTCAGTTTAACAGGTGTTTCTGGAGCACCTGTTCTGGGCCAGGCCCTGGTCCTGGATACCAGGAATACCCAGGACCAAGGCCTGGCCCCTGTCCTCATAGAGCTTTCCAGTCACAGTCCAGGGTGGTGAGGGGGCAGCCAAAGAGGGCATGCACAGAGGGGCTGTGGATGGAGGGTTGCAGGCGTGGCCTCCAGGCCTAAACAAATTGGGGGTGATGCCAGCTTTGCTGCTCAGAAATCAGTAGTGGCATGACCTTGGGCGAACCCGTTGGTTTCTCTAAGCCTCCGTTTTCTCTGCTTAGAAGTAATAGTCCCAGCTCAGACTGTAAGGAAGGGCCACAGCCTTGGGGGTGGTCATCATTTTTAGAGGCTGTATTTGTTTGCCTGGTACGTGGTGGAGGGCACTGCTAGGCATGGCCTTGTCTGGAAGGGGCTCATGTCAAGCAGGTGACCACCCCGCCCAAGACTGTGGTCTCTGCAGCCTCTAGGAGCTGGCAGGGGTTCATGGTAAAGGCTAACCATGGCTTGGGGCTCACCAGGGTTCACCACCCTACTCCTCCATCAACCAGCTGGGTGACCCTGGGCAAGTGAGTTAATGAGCCTGGGCCTTAGTTTCCTCATATGTGAAATGGGTGAACCATAGAAAGTTGTTACGAGGATTCGATGAAATGCCACGTGTGATGTGTTGGGCATGGATTATGGCCACTGTGGGAACAGGAGGGCTTCCCGGAGAAGGGGACAGATTGAGCTGCACCTGGAAAATATAGATTGGGAAGGGCACTCTGTGGGACAGGCGCAGCACGGGCAAAGGCCTAGAGGATGCCACCCACAGCCTCCTCCTGGAAATCAAGGGGCTGGCACTGAAGAGCATGGGTGGGTCCAGGCCCCGCCTGTGTTTAGGAGGAAACTAAGGGAAGCCAGAACCAACTGGGGCCCACACTGCTGTGTTTCCAG
Seq C2 exon
ATGAGATCCAGAGACATATCCATAGAGGAGTGGAAAGGCTCAGAGACCTACAGCCCCAACACCGCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.460 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGGAGAAGGATATAGCCG
R:
GTATGCGGTGTTGGGGCTGTA
Band lengths:
214-2170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development