GgaINT0124562 @ galGal3
Intron Retention
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5720128-5721012:+
Coord C1 exon
chr17:5720128-5720313
Coord A exon
chr17:5720314-5720942
Coord C2 exon
chr17:5720943-5721012
Length
629 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
AATGCTCTTTTGGTTTCCAGACT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTGAGACTGGGAGAGAAGGAGTTGGGCAGCCCAGAAGATTCAGAGGAGTTGATCACAGTGGATGCTGTTGGCTGCTTTGAAGATGATGAAGAGGAGGAAGAGGAGGAGGAAGAAGAGGAGGGAACTGGTGAGGGGGAAGACCTTGATGTAGTGCTGGTAGAGAATGAGGACTCTGCTGCCAAGCAG
Seq A exon
GTATGCCATGCAAATGAGGACTGATCTATCTGAGAACCTGCTGTGGGCTCGTGTGACTTTGGTTCTTGTCTGCTTGAGCTCAGGGTTTAGAGTCTAGTGCCACCCTGCAGCAGGAGCGTGAGGGCCCTGGAGTTCTTCTAGAGCACAGGACAGTGCAAAAGAGAATCAAACACTATGTGTGGATGCAGAAGGGTGTTTCTGTTGTGCTGTACAGCTCCTACTGGTATCTTCAAACATTACCTTGTTGTTGAGGAGCATAAGCAGTGTTTTTATTTTTTCAAGGGAACAAATTTCTATCAAAGACATTGACAGTCTCTTTGAATAGCCCAGCAGCAGCTTGGTCTCATGGCAAACATATGTGTGGAGGTTTATCTTGATAAATGCAATTTTCCCAGTAAAGAGCTGTGTACCTCTTCTTGTAACAGCTAAACTACTTCAGGCTCAGAATGTAAGGGCTGCTTTTAACCTTGCCATGAAGTAGCCTCTGACAATGGGTATCTGCCCCTAGCCAGATGTTATGCAACTCTGTCTCTGGTATACGAATCCTCTGTTTTGCTTCAGAGTTTACCAGAAAAATGGAAGGTAATTGACATAGATATGCTAGGCACTAATGCTCTTTTGGTTTCCAG
Seq C2 exon
ACTGGGCTGAAGGAAGTGTCTTTGGAGGATTACAAAGGAAGTGAGAAGTATTGTCCAGATACAGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789:ENSGALT00000034607:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0105613=Myc_N=FE(64.2=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACTGGGAGAGAAGGAGT
R:
TAGGCTGTATCTGGACAATACTTCT
Band lengths:
254-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]