RnoINT0036645 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11405346-11406331:+
Coord C1 exon
chr3:11405346-11405501
Coord A exon
chr3:11405502-11406261
Coord C2 exon
chr3:11406262-11406331
Length
760 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AGTTCTTACTCCCTCTCTAGCTG
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTGAAGACACTTGAAAAAGAGACAGGCAGCCCAGATGAGGACCACTTCATCACCGTGGACGCCGTTGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGATGATGAAGAAGAGGAAGAAGAGATTGAGGCGGAGGAGGAATTCTGCAAGCAG
Seq A exon
GTATGGGGCAGGCTGTTGGTGGCTCCTGGAGCCCAGACGTCATGCTGGCATTTGTAGGCGCTAACGTGACACATTGAGCCAGGCTCACGAGGCATGCACATCAGACTGTTCACAGCCCTGTGAGGCTTTGTCTAAGAGTTTCGTCCTCTCTGGACAAAGTAAAAGAAATGTGGGTAGACTGAGGGTGGGGAGGGAGGGCAGAGGGCTGGGAATTATAGTCCAGTGCCTGCCTATGCATGTGCAAAGCCCTAGATGCACCTCGGGAGGTGGGGTCATGGAGGGCCCAGCAGGAAGCAGGACTGAGAGCTCCAACCATGTGCTGTCAAGACCCTATCTGAGGGGAAAAAGGATGGAGAGATGGCTGGGTGGTGAAAAGCACATGGTACTCTTCCAGGGCACCTGGGTTCAACTCCTCACACCCATGTCAGGTTACTCATAACTACCTGTACCTTCCGTTTCTGGAAATTGGACACCTCAGGTACCCATGCCCCCACACACTCAAACATATTGAAGAAGCAGCCTAAGAAAAGAAGGGTTTATTTTGGCTTGGGGGAAGGAACAAATGGGAACCCACAAGCATACATCGGAAGGACACATGGGAGGCAGGCTCAGCGTGTGCCAAGGCTTAGGCAGCCACCCTCAGCCACCTGCAAGCTGAAGGAATGGTTGTGCTCTAGAGACTGCAGGTGGGCTGCAGGCCCCTGACCTGTATCCAGGTGGGACCCGAGGCACCACATCTGAGTTCTTACTCCCTCTCTAG
Seq C2 exon
CTGCAGTCAAGAGAAACATCTTCAGAGCAATGGAAGGACTCTGAGACTTACAGCCCCAACACGGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTTGAAAAAGAGACAGGCA
R:
CGTGTTGGGGCTGTAAGTCTC
Band lengths:
215-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]