MmuINT0036592 @ mm10
Intron Retention
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32376266-32377362:+
Coord C1 exon
chr2:32376266-32376427
Coord A exon
chr2:32376428-32377292
Coord C2 exon
chr2:32377293-32377362
Length
865 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AGTCTTTACTCCCACTCCAGGTG
3' ss Score
7.33
Exon sequences
Seq C1 exon
CTGAAGACACTTGAAAAGGAGACAGGCAGCCCAGATGAGGACCACTTCATCACTGTGGACGCCGTCGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGACGACGAGGAAGAAGAAGAAGAAGGAGAGATTGAGGCTGAGGAGGAATTCTGCAAGCAG
Seq A exon
GTGTGTGGGGTGGGCTGTTGGTGGCTACTGGAGCCCAGACACCCATGCTGGCACTTATAGGCACCAACACAACGCAGTTATGGGCTGTGTTGTGACCATGGAAATAAGCACAGAGGGACGGGTGAAACATGCAAGGGCCTGAAAGGCTGGCCAGGATAGCCACTGTGGGGAAAGAGGGAGGGCAGAGGGAACGGTGTTGAGCCAGGCACACAAGGTGTGTACAGCAGACGGTCCACGGTCCTGCGAGGCTCTATCTAAGAGTTTCATGCTGTTTCTGGACAAACTAAAAGAAATGCAGGTAGACTGGGGGCAGGAGGGCGAAGGCAGAGGGCTAGGAATTATAGTCCAGTGCTTGCCTATGCATATGCAAAGCCCTGGATTCAAACCCCCGGGACCCTCGGGAGGTGGGGTCATAGAGGCACCAGCAGGAAGGAGGCTGGAGCAGGGCTGAGCTCAAGTGTCAAGTGTGATGAAGACCCTGTATCAGAAACAAAATAAAGGCTGGAGAGATGGCCAGGTGGTGACAGCATGTGCTGCTCTTCTATGGGACCTGGGTTCAATTCCCCAAACCCCTCTCAGGTCGCTCATAACTGCCTGTACCTCCGCTTCCTGGAGATTGGACGCCTCAGGTACCCATGCCCCCACACTCTCAGACATCAAAATAACACAGCCCAAGAAAAGAAGGGTTTATTTTGGTTTGGGGGAAGGAAACCCACAGAGCATATGTTGGAAGGACGTATGGGAGCCAGGATCTTCCCACCTGCGAGCTGAGGGGATGAACGGCTGTGCTCTGGAGACTGCGGCGGGTGGGCTGTCTCCAGGTGGGACCAGAGGCCCCACATCTCAGTCTTTACTCCCACTCCAG
Seq C2 exon
GTGAAGCCGAGAGAAACATCCTCAGAGCAAGGGAAGGGCTCTGAGACGTACAACCCCAACACAGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205:ENSMUST00000113332:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF052857=SDA1=FE(32.5=100)
A:
NA
C2:
PF052857=SDA1=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACACTTGAAAAGGAGACAGG
R:
CATAGGCTGTGTTGGGGTTGT
Band lengths:
231-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types