BtaINT0038854 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73525877-73530663:-
Coord C1 exon
chr2:73530557-73530663
Coord A exon
chr2:73525994-73530556
Coord C2 exon
chr2:73525877-73525993
Length
4563 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCCTCTTCTGATCACTGCAGTCG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGCTCTCCAAGCAACACCATTGGCCGGACTCCCTCCAGACACCCCAGCAGCCGGACCAGCCCCCTGACCTCACCCACCAACTGCTCCCATGGTGGCCTATCTCCAAG
Seq A exon
GTAAAGCAGTTTCAACAGTGAAGACACTAAAGCACCCCCATGTCTCTTCTAGCTAATTTTCAGATTATAGACTGAGCTTAATACCAAAAAGTGTATGGGTACCAGGAGCCCACAGGTCCTAGTCTTCACCCATATCTTAACTGTGTAATTGATTTTGGGCAAAGCAGTTAACTTCTGTGGCAAAATGAGCAGTTTCTGCTGAATGGTCTCTGAGAGTTCTTCTAGCTCTAAACACTTTCTAGTACCTTAAAAATTTTTAAACCAAAAGTTATATTTAGTCCTGTTTAACATAGAAGCTCTTTAGCTGTTGTGTGAGCAATAGCAGCACCTTAAGGTATTTGACCATCTAAGTAAAATCCTTTATAATTGTCCAGAGTCTGGGGTAGTTTCCAGCCAAGTGGCCGTTCCAAGCATGGTTGCTTTCATCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGAAGTACTTCCTCGATCATCTGTTGAAATAATCATGGTTTAAGGAAAAAGTAATTATGATGTGCAGCAAATTGCAGAAAACAGGATTTGAACCAGTTTAGAGTCTGTTTTTCCTTCAGTGAGAAACTTACCCTTTAAAATGTTTTCTTGAGGGTTTCATTGCTTCAGTAAAGGTAACTACAGATCTCAAGTCTGTATAACTTAAGTTTCAAGTAGAATTCTTCAAACCAAATGGAAATTCTTTTGCAATCATGGAAACATTTTAGACCCTCTGAACTGGTTTTTCCATATTTCCTTATGGAAATGCATTCAGTTCTTTTTCCCATGCCTGTTCTGATGTTAATTTTTAATGAGGTGTTTGCTGCTCAGGTGCAGAATCTCGGCAACTGCCAGGTTGTATGGTTCCCGCCTCTGAGCTCTAGCTTGACGTTGGAAGTCGTGAAAGACACTGTAGCAGAACATAACTTGTTTTCATTCAGAATTTATTTTAGATACTTTATTTGGAAATAGGCACTGAAAATGGAGGTCCAGGAGCAGTGAGGCTGGGGTGCCTTCACTGCGTGCGTGTGGGTGTGTGTGTGGGTGTGTGTAGGGGGTATCCTGCACGTGTAGGAGGTGCCCCGCTGCTGCTGTTGAGAGAACTTCAGGGGTGTGTTTTAAGTGATCAAACATTGTTGACTCTTGGCTCAAAACAGCAGGACCAGGCCTTACTTCCATTGATAAATACCATAGTCCAGGTTCAATGCATGAGGCAGGATGCTCGGGGCTGGTGCACTGGGATGACCCAGAGGGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTTTGGGTTGCTGATGCCAGGATCTTAAAATTAGAGGAAAATCTTACAAGTATACCATCCCCCTTTAAGAGTTACCTCTTTAGTTGGAAGATAACAATATGGAAGTACCTTTAAGTTTAGATTTTTTTGATGCTCGAGAGTCTTCCAAACTCTGCTGTCCTTACTGCTGAAGTTCTGTTCAGTTTCTCAAGTTATCATATAAATATTTTAGAAAATGTCAGATTTGTATTTTTCTCTTAGAGAAGCGAAATATTTTGTATACTTATAGTATCTCAGTGTTTATATTGCCTGAGGTCCCCCTGGCACTGTATTTAGGTAGACCGAAGTAACATTGTGTTTCCAAATTTGGTCTGTGTGGTCATGATTTCAGCAGGCTAATCTAATTAAACAGTTGGGACCAGAAAGTAATGAAAACATGTCTTACTTTTCCCAAGTATGACTGAGACTCAGCCAACTTTTTATCTGTATCTAAATAAATGGTTTGTCTTAAATAACCCCAGAGTTGGCAGTAAAATCATAGAATTCTCTTCCTTCGTAGGAGAAAATTTGTGGAAAACTTGTATTCTCTATAAATTGTTGCTTTTGTTTAGAAGTGATACTTCTGAAACATTGACAAATCTGTTCTTCCATAATACTCAGTTCATACTTACTTTTTAGTTATTTCACTAATAAGGTTGCACATTCTTTATGTAATAAAGGATAAATTTCAGATTAAATATTTTGTTATTATATGTGCTGATAGTTTAAGTGAAAGATTGGGGGTGGGGGAGCTGCTAGTATAAGCCATGAGAGCTAAGAATTGGCTAGGTATTTTTAAATTTCATGGATCTCCAAATTATTTTAAAACTCTAATTTATTTTTCCAGGTCACCATTCATTCTTAACTAGCCTGATCTAAATTTTTACTGTTAGGGTTACCAGGTGAGTGTAAGAAATAAGAAGTTTTTTTTTTCAGTATTAAAAAGTCCAAGTGAGGCTGAAATATTTTCTTACCAACAAATTGTTCTGTAAGAAATTACTTAGTTATGTAGTTTCTGTCTTTCTTTTTAAACAGAATATGCCCCAGTCAGTGTGTAACTAGCCAGAATGACCTAAGCCAACTTGAACTCATTGGGAAAAATCATTTTTCTCACAGCTAAAACTGTCCAGAAGTAGAAAAAGCTGCCTCATGTCATCATATCATAGGAAATATTCAAATAGGATGCATACTTTCTACCAGGAAATTTATGAAAGAAATGAACTCTTGCACTAATTAGGACAATGTATTAGGTCACCACATTGTAAGTAGGCGATGGACAAATACCACCAGATATAAATCTGGTTATTTTTTTGAGTAGTGCTCTTGAAACATGTATTTTTCTATTCTGCTGTTCTTTTGAATTATCTTGACCATTTGATGTTAGTTTTTTGTTCTTAAACGGAAGAGTTCTTGCCAATTCTTCATTTTAAGTCAATTTCGAGTATCAAAATGAAGCTTTTTTAAGCCCCAAAGTTCTACCCTCAGATTATGATGCTAATAAGAAGATAGTCTAACATGATGACACGTTTGAGTTTTTTTTTTTTTTTTTTTTTTAATTGCTAGTGAGAAAGTCATTTTTATCAACCTGGTAGATAACATTAGAGAAGCCACAGCTAACAGGTCAACCTTCTGTGGAAATTCCATCCATCGGTTATCCTTTTCTGTGAGAAGGAAGAATTATTGTTTATTCCCATTGAGCAGACAGACACTGCTGGGTCTTTGGAGAGAAGACTTATGGTCTGAAGTGTTCCATAAATTAAATATATGTTTACATTTTAGCTCCATTTAGTGGGATTGATGTTAAATGAAAAAGAGTTGCTAGGGGCTTCAGCAATTACGTGAAGTCTGTTCCCTTTAAGATAGAAAAAGCGCGTGGCTGTCCTTATTTGAGTCTGCTGTGCGCTCTCAGTGAAAATGCCTTAAGATGCTAAGTAGGTAACATCTGGTAACCAGCAATAAGAGGTAGTTTCAGGCAGATTTTACACTCAGTCCATCAGATGATGAGGAGTGTGCACCGACTCAAAGTGGGGATCAGCCTGGAGACCCCCTCCCACGTTGAGGTGCTGGGGCATCTGCTTGATAAAACCCTATGGGCAGAACTCCAGCTTGAGGGGGTCGTCTATGTCCTCTTGTGTCCCTGACTCAGTGTGTGGCCTGGGGGATGCCTTTAGGGCCCTTCTGTGCTCCAGTGGCCGCTCCCTCCACACCTTGGTTTCCTTATGACGTGGGGCCACCACTGTCCTCAGCTGGAGACGAGCCTTGGACCACTGCTCCTGAACTGTGATAAGTGCCAGGGCGGGTGTGCTGCTCTGAAAATGCTGCCCTAGTCCTCTGGCCCCACCCCGTGGCCTCCTATCACACCTACAGGCAGTTCGGTTCACACCTTTCCCATCTTCCTGGGTCTACTGAATTGCAGCAGATGCTAGAACTCAGGCGGGGCCTCTGCATGCCCAGGTCACTTGCTGAGTGAGGAGTACCTGTGCTCAGATGCACTTTAAACGTCTTATCAGGTCACACGAGCAGGGGGCTTAGGTTTTCTGTCCCTCCTGCCTGAGCCAGCCAGTGGGTTGTGCTCCCCCGTTCTCTCGCGGTGCTGTTCTCTTAGGGGGAAGTTACTCGTGGCACCTCTGGACCCCATCTGAGGGTCCCAGTGGGGAAGCATGGTGTTCCCTGCCTGAGTGTTCTGGTGGGTGGTACAGTCTCTGAGACTCTGCTATGGTTCCCTTGGTCCTGTTTGATTCAGGCCCATAGTTCTTCTTTGGGTTTCGTCTAAAATAATTGATTGCATTATCTGAAAGTAAACATCTGTGGTTTTTTTGCATGTAAGCATTTATAAGTTCCTTTACACACACACACACACACTCCTATATACTTGGAATCTCATGTGATTTAAAAATGTAAATACAGAACTGAGTGAGGAAAGAATGAGAAGTCTTGATGGAGGACCAAATTGTAAAATAAAGTTGGTCCTTTTCTTCTGAATGGTGAAGTGTAAATTTGGGTAGAACCTTGTCCCAAAGGGATGAGACTGTAGGACATGTAGAGTATAGTGCCTCCCTGCCCCCTTTGCCTGTTCTGTGTCTCTTTCTGACTCTCCTCTTCTGATCACTGCAG
Seq C2 exon
TCGGTTATGGGGTTGCAATGCCGATGGGCTGTCGAGGCACCCACCTCCCTTTCCTCAGCCTAACTCCATCCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781:ENSBTAT00000065657:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]