MmuINT0036723 @ mm10
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118561011-118565259:+
Coord C1 exon
chr1:118561011-118561117
Coord A exon
chr1:118561118-118565142
Coord C2 exon
chr1:118565143-118565259
Length
4025 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TCCTCTTCTGATCACTGCAGTCG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGATCTCCAAGCAATACAATTGGCCGGACACCTTCCCGCCACCCCAGCAGCAGGACCAGCCCCCTGACCTCACCCACCAACTGTTCCCATGGGGGACTATCTCCAAG
Seq A exon
GTAAGCTCATTCCACAGAAGTGAAAAATGAAAGTGCCCCATCTTTTGCAGCCTGCTTAGACTTAAGCTGAAAGCAGAGTCTAGGACAGGGGTGTGGGCTCCCTCCTCCCACCACTTGTAACTGTGTAGTCTTTGTGAGTTAGCTCCTGCACCACAGTGAGTAGTTTGTGCTCCATGTTCTCTGTAGTTCTGCTAGCTCTAAACACTGAGCCAAGTACCTCATAAATGTAAACACTGAAGGTCACACGGATTCTTGAGGAAGCGCTTCAGCTGTCCTCTAAAACGTAGAGAATCATAATGGTATTATTGAGTTAGCAATAGACCCTTTAGAGTCTGCACCAAGCCTGGGGTAGTTTTCCAGTCAGTTTTCCACTCCAGACCTGCCTGTTTCCTATTTAAAGCAGATGCTGCTCTGCAAAGACAGTGGCTGGAGACTTGCACATCATGGCGTTCAGCATGTACAGACTCCTGTTAGTCTGGGGGCCTAACTTCTTACTTGTTAGTTTTATTTTTGTTTTTGGGCTGTCTGCTAAGTAGTCCTAGTTGGCTTGGAACTTTCCATATATAGCTTGTCTTGGCCTCTAGGCTCCTGAGATGGCAGTCATATATCACCATGCCCAACAGTAGGGTGACTACACAGGAGAGGTGTCTCAAGGCTTCTTAGACCTCAGAGTGGTGGCTCTATGAAGCCACAAAATATTCTGGATCACCAATGACCTCAAGTGCTATATTTTATCTATGAGAAGTCAAGGTCTTTGGGCTATAAAAATATGCCAAATATACCCTTTCCTGATATATTTTTCACCTGCTAAAGGGATGTCCACATTTATTTTTGTTTTTGCCTTTTGTTTTGGTTTTTGTTTTGAGACAGGATCTCATTTAGTCCAGGCTGACTCAAACTACATAGCAGAGGATAACACTGAACTCAAGATCCTATGCCTCCACTCCTTCTCTACCCACCCCCAATGATGGGAATTGCAGGCATGTAAGATCAAGCCTAGCACACTGGTGCTTTTAAATATAGTGGATTCCTTTCTTACCACTAGCGTCCTCTTCAGACACCAGTTATTCAATGTCATGGGACAAAGACAATCTGTGCTTGGGGAAAGCATGTGTTCTATAAGCTGTTACCACACCTTGCTGTCTTTGAATGCTTTGTATGGGCTGTATTATCAAGTAATATCTATAATATCAGATCCATACTTGATCTGTAGTATCAAGCATGATGCTATATCTCCAGATTCGATCTGTGTTGTTAGAGTTGCAGCATGTTAGAATCAGACAGACACTGATGAGAGGCACTCTGCCCTTCCAGTGATTGACTGCTAAGATCACTGAGGTACATGGTTTAGCCTGAGTGATCAGGGTGCAGTACAGACAGTGAAAACTTTATGGAGAATGCATGTTCTCTATAAATTAATGCTTTGTCTCAGCATGATGCTTTGTATTCTTAATTAGGAAGCCTGTTCTTCCATAGTTCGTATATCTTTCAGCTATTGCATTGTTAGGTAATGAGAAAAGATAATACCTCAAATTAAGTATTTTACTACTTTGATACTAGGTTAAAAAAACTGGCTAGAAATTAATCTTTGCAGGTTTCCAAAACATTAAAAATGTTCATTAATTCTTAACCATAGCTTTAAAAAAATTTAAAAAAAAAACCTCTTAGGAGAAAGAAATGAAGAGATTTATTTTCAATATCGAAAGTTCTGGCTGTGACCAGAATATATCTTCTCATGGCCATGTCTTCTTTAGTGAATTACTCAGTTAATGTAGTTTTAGGTTAAACACAAGAGTTGAGTAGCTTGCACATCTCTCAAGGGGTAATAAACGTCACCTCTGCCATGTTTCTAAGCCAAGCATGATCTTCAATGGAAAAAAATAGAAGACCGGCTATTTGGTTGGGTTTGTTTGTTTGTTTATTTGTTTTTTAGTTCTGCACATCAAGATGAACTAGGATTTTTGTTTTAATCCAAAGTTCTGTAATTTGATCACGGTGATAATAAAGGACTGTTTAAAAGTAGTAATAGCTCTAATTTGATGGTAGCTTTAGATTTCCCTGGTGAGAAAGTTCTTTTTATCGACCCAGTAGTATCATGTCATTACTGATTGGTGCGTGAGAGAGGGGTGGCTGCCAGCTATTCCCAACTAATGAGCAGGTATGACCCGATATCTGAGTGGAGATTATCGTTTAACACATAATTATATTTTACAATTTTGTGGTAGAGAAGAATTGCAGTGGCAAGTATCTCAGATCTTGCTGCAGTCTGCTCTGTGTTCCTGATGATCATGTCCCAGAACAGAATGGAACTGCATAATCACCTCTGGGTGCACTGGCAAAGCTGCCCTTCAGATGGCTCTTGTTTTTCTCCTGGCTAGGTGAGGTAGCATCTCTAGACCATGGCAAGTGTTCATATCAAGCCCAGCCCACATGTGGAACCACACTTGGGTACCACCCCTGATCCTCTCTTACCCCCAGCCTAAATGTGGCTTGAAAAGGGCTTTAGATTCTGTACCACAATGACCTTTCATCTCCAGGCTGTATTTTCCCTACCAAGCGGGTTCTGTGCCCCTCCTCAGGGATGCTAACACCCAGGGACACCAGCTGTGAGAACTGTGTTGGTGGTACTGAAGGTGGTGATGGCTCAATTGGTAAACCACTTGCCTTCCAAGCATGAGGACTTGAGTTCAATCCTCAGAACCCAGTTTTTTAAAAATGTAAAAGGCTAGGCACTTCTATTCCCAGCAGTAATGAGATAAGAGGTGAACACTAATCCCCAGGCCATGCATGCAAGCCAACCTACCTAGCCTAGCCTACTTGGTGAAGTTTCTGGATACTTGGACGACTTGTCTCATTAAAAATAGAAGGCACCTGAGCAGCCCCTGAGGTTGTGGTCTGACCTCCATACAGACTGCTGCAGCAGGCAGGATAAGACTTGTGGGGGCCTCCGCAAGCCCGGGTCAGTTACTGACACTGTGACAAGCAATTGGATAGCTGTGTTCCCGGGTGCATTTTAGTTTCCTATGGGTGAGACAGAAGCAGAGGAATGCCATTTCATGTCTGTAGTTTATTTTCTCCTCTGAGCTGGCCAGCTGAGACTTATTGCTTCATCTACCCACCCTCCAGGGTACTCTGTCTTCTGAACTCTGACTAGATCCCCAGCTCAGCAGCACTGTCTGCTGCCCCAGAGTCCCCACACTATAGTGTAGTTTTAGAGCACCTCAACTGTCCCACTTGAATTAAGTCTTGAGAGTACTACCTCCAGTTCTTTCTGAAATGACTCAGGTACCACATTAGCATCCTCAGTTTCCAGTGCTTCCAATGTACTGGAAGCACATACAGCCCAGGCAGACAGTATGCCCTCTCAAAGGTATGTACATGGCTACTCTAGGGGTCCCCTTTGACTTTGGGTTGTTTTTTTGTTGTTGTTGTTGTTTTTTGTTTTTTGTTTGTTTTTGTTTTTTCTTATCCAGATACAGTGTTTCTCCATGTAGCCTTGGATGTCCTGGAATTCACTCTGTAGACCAAGCTAGCCTCTAGCTCACAGAGAGATCTGTCTGCTTCCTGAGTGCTCTGCCAAATGTATTTGTGTATTTTTTTTTTAAATGTAGAACTCTGTCTGCACATACACCTACATGCCAGAAGAGGGCATCAGATCCCTTTATAGATGGTCCTAAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGTTCTTAACTGCTGAGCCATCTCACCAGCCAACCTCAGTTGATCAATGCTATCAGCTTAGCCTATGGTTGGGGAAGAAAAAATAAAAACAGTCCTAACTGAGAAGCCAACTGTAAAATGAACCTGTTCTTTTTTTTCCCTCCATGTACAAAGTACTAAATTTTGCTCCAGCTGACTTTATAAGTTTGTCAGAAAAGAGGAATTCTAAAGAAACTCCGATGGAGCATCTCCCTCCTCCCCTCCCCCTTGTATCTATGCTTTTCTCTCTCTGATTTTCCTCTTCTGATCACTGCAG
Seq C2 exon
TCGGTTGTGGGGTTGGAGTGCCGACGGGCTATCGAAGCCCCCACCTCCCTTTTCTCAGCCTAACTCCATTCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302:ENSMUST00000190571:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types