BtaINT0038877 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7882146-7883533:-
Coord C1 exon
chr22:7883478-7883533
Coord A exon
chr22:7882320-7883477
Coord C2 exon
chr22:7882146-7882319
Length
1158 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CTTTCCTTTGTTCTTCATAGTAT
3' ss Score
8.9
Exon sequences
Seq C1 exon
TCGCCCCTTTTCTGCAAAATGGTCTACAGCAAACCCATCTGCTGTGGCTGGAAGAG
Seq A exon
GTAAATTGCCTTTTTAAGAGTCATAGCATATTTTACTTAATAAAGTAAAAGTGACTTTATAAATAAATGTTACTGTGTAAAAAGCTTTTCTCACTCAGTGTGTCATCAAGAATTTAAAAGTTTAAAACATTTTTAAAGTTTTCCTTAAAAGTTTTTGAAGCACATTAGAACTGTTTAAAAGCTAAATAGTTAAAAACAATAGCTTTTAAACTGTTTTAATGTGACCCACAAGGAGAAAATCATTTTACATTGTAAATACCACACATATACACTTTACAACCTGTGTTTGTATACCATATACATGTACTACATACAATGTATTATATGTAATTATATACCTACAACATACATGTAACATGTAGTATATTATATGTCAATATATGTGTATAGTATAATCTGAAGTTCCAGGAAGTCTACTTACCTTTACTTGTGACACACTCTGTTTTCTATTTTGTTTCATTTCTTTAAAGTGCCATCCTGACCCACTCAGTTAATTTCACAGCTTTATTAATGGGTCATAACTCAGAGTTTATAAAATTCCTTATTAAAACTGAAAAACTAAACACCAGAAATTTATTTTTATTTTATTTTTTATGTTTTAATATTTATTCAGGTCCATTTTTGAACTGAGGTGACTTCTTTCAGCATCTCAGCCATTAAACACCAGAAATTTAATGACTTAATTTGCATTGCCTGAGAGTGGCAGAACCTGAATTATTTTCTGAATTATCTTATCCCCAGACTGGTTCTACTTGCATTATTTTTATGGTCAAATAAATCTGTTTATCTTGTGTAGCACTTCAGTTTCATGAATCAGTTGTAAATATCATCTTTTCATTTACAAAACAATCCTATGAAGTTTTAACAAAGTATAGTTATTTTTTCCCATTTTTTTGGAAGGGGGAAATGAGGCAGAGAAATATTGAGAAAAAATTGTCCAAGATGATTTACTTGCAACAACATTGAAACTGGGGCATCCTGATTTTAAAGTACTTTTGTAGAATCTAGAAATAAAAGTACTTTTCTAGTATCCATTTGGCCACTATTTCCTTTTTGGATCATTATTCAGTATCTTGTGGTGATTTCAAGTGTATATAATTTTTACGCCATTTGCAATGATGAAAATAATACAGGTTACCTTTCCTTTGTTCTTCATAG
Seq C2 exon
TATCAGCAGGCAGCAGCAAAGCCAGCTCTCTTCCTGGAAGCCTGCAGCGTTCACGAAGTGACATTGATGTGAATGCTGCTGCTGGTGCCAAGGCACATCATGCTGCCGGACAAGCTGTGCGAAGTGGCCGGTTAGGTGCAGGGGCCCTGAATCCAGGTTCCTATGCATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333:ENSBTAT00000015071:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCCCTTTTCTGCAAAATG
R:
CTAGTGATGCATAGGAACCTGGA
Band lengths:
230-1388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]