MmuINT0036753 @ mm10
Intron Retention
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113853349-113854346:+
Coord C1 exon
chr9:113853349-113853404
Coord A exon
chr9:113853405-113854172
Coord C2 exon
chr9:113854173-113854346
Length
768 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
ATATAACTTGTTTTCTGTAGTAT
3' ss Score
4.95
Exon sequences
Seq C1 exon
TCGTCCTTTTTCTTCTAAATGGTCAACAGCAAATCCTTCAACTGTAGCTGGAAGAG
Seq A exon
GTAATTACTTCTTGGAGTAAGAGTTACAGCCAATTGTGTCTCTAAGCAGTAGCATTTAAAGTGGTTTGAAGTGATCCACAGTGAGAAAATATTTTCATGACACAGTACCACAAATTGTGAGGACACACCTTGACTCTGGAGGCAAATAGAAGCCAATGCTTTGGGAAGTAGCTTAGATTTTAGTGATCCAGTGTGTTTCTTGTGTTTAATTGCTTTAAAATGCCAGTTAGGACCACTCAGTTGACTTCACAGCTATTACTGAGGCAGCTCATCATATAGTCAAACGCTTTTAAAAACTGAAGCTAAATTTCAGTTCAATGACTTGGCTCAGACTTCCTAAAAGGGACAAAGCTGCACTAATGTTGCAATATCCCAATACCTAGACTAACTTTTCTTGCATTTTCTAATAGTAAAGAATAACAATATGCTCATATATTTTAGTGTTTTATTTCCATAAATCAGTCTTAAGCATATCTCTTCTGTTACCAAATAGACCTGTCAATTTTATAATCAAAAGTCAGCATTTTTTCCATGAGAGAAAAATGAAGCAAAGAACTATTCAAAATTGCTGGAGAAAACTGTTTTATCATAACTGAAACGGAGCATTCTCACTTTAAGGTGATGTTACGGTGCTGCCTGTCCACTTGGCCACTGCTGCCTTGTGGACTGTGTGTTGCCACAGATGACGAGTTTATGATGGCTTTGCGTTCATGTGTCTTTGTTTTGTTTGCAGCCACTTAAATAACATATATAACTTGTTTTCTGTAG
Seq C2 exon
TATCTGTGGGAGGCAGCAAAGCCAACCCCCTTCCAGGAAGCCTGCAGCGTTCTCGAAGTGACATTGATGTGAATGCGGCAGCTGGTGCCAAGGCTCATCATGCTGCTGGGCAGGCGGTGCGAAGTGGGCGCTTAGGTGCAGGTGCCCTGAACCCAGGCTCCTATGCATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392:ENSMUST00000111838:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCTTTTTCTTCTAAATGGTCA
R:
CTAGTGATGCATAGGAGCCTGG
Band lengths:
230-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types