HsaINT0035755 @ hg38
Intron Retention
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr3:33602952-33604209:-
Coord C1 exon
chr3:33604154-33604209
Coord A exon
chr3:33603126-33604153
Coord C2 exon
chr3:33602952-33603125
Length
1028 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CTTTGCTTTGTATTTCGTAGTAT
3' ss Score
7.83
Exon sequences
Seq C1 exon
TCGCCCTTTTTCTTCCAAATGGTCTACAGCAAATCCATCAACTGTGGCTGGAAGAG
Seq A exon
GTAATTTTCTCTTTAAATAAGAGTTATAACCTATTTTATCTTTGAAACAGTAGCCTTCAAACTCTTTTGATGTGCTCCATAGTGAAAAGATCGTTTTACTTGGTAACTCAGTACCACACATATGCACTGTACCTGTATATGTATACGTGTATACATATATAATAAAACCCGAAGTTCCAGGAAGCCATACTTACTCTTACTTGTGATGCACTCTGTTTTCAATTGTTTCATTTCTTCATAATGCTTCTCATGACGCACTCAGTTGATTTTACAACCTATTAATGGGTCATAACTCACAGTTTATAAAACTCCTGACCAGCCTGGCCAACATGGGGAGACCCCATCTCCACTAAAAATACAAAAATTAGCAGGGCATGGTGGCACGTGCCCATAATCCCAGCTACTCAGGAGGCTGAGGGAGGAGAATCACTTGAACCCAGAAAGTGGAGGTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAATAAAATAAATAAAAATAAAAAACTGAAAAACTGAAGACCAGAAATTGAATGACTTAATTTGCATTCCCATGGAGTGGCAGAACCTCCATTAATTTTTTAATATCTCTACTCCTGGACTAGTTTTTCTTGTATTTTTATCATAGTAAAAAATAATACTGCTGCTTTCTATTTATCTTGTACAGTGCTTCCTTTGCACAAATCAGTCCTAAACATCATCTCTTCATCTACAAAACAGTCCTATGAATTTTACAGTCACAATGTCACCATTTTTCCCATTTTTATGGGAGAGAAATAAGGTAGAGAAATATTGAGAAAATTGCTGAAGACTTAGTTGTGATTGAAACTGAGGCATTCTGACTTTAAAATGCTTAATAGTACTGTCCATTTGGCCACAGCCTTTTTGTTGACCATTTGTCATCAGATTAGCTCATGGTGGTCAGGTTTATATAATTTTCATGTTTTCAGTGATTTAAATGATATAAGTTATCTTTGCTTTGTATTTCGTAG
Seq C2 exon
TATCAGCAGGCAGCAGCAAAGCCAGTTCCCTTCCAGGAAGCCTGCAGCGTTCACGAAGTGACATTGATGTGAATGCTGCTGCAGGTGCCAAGGCACATCATGCTGCTGGACAGTCTGTGCGAAGCGGGCGCTTAGGTGCAGGTGCCCTGAATGCAGGTTCCTATGCGTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539:ENST00000468888:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCCTTTTTCTTCCAAATGGT
R:
CTAGTGACGCATAGGAACCTGC
Band lengths:
230-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development