RnoINT0036787 @ rn6
Intron Retention
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122114303-122115296:+
Coord C1 exon
chr8:122114303-122114358
Coord A exon
chr8:122114359-122115122
Coord C2 exon
chr8:122115123-122115296
Length
764 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
GGCTAATTTGTTTTCTATAGTGT
3' ss Score
5.68
Exon sequences
Seq C1 exon
TCGTCCTTTTTCATCTAAGTGGTCAACAGCAAATCCTTCAGCTGTAGCTGGAAGAG
Seq A exon
GTAATTACTTCTTTGAGTAAGAGTTACATCTGATGTTGTTCTAAGTAGTAGTGCCTAAAGTGCTTTGATGTGCTCTACAGTAAGAAAATATTTTCATGGCCCAGTGTCACAGATCATGGGGACACACTGTGACTCTGGACCTGTCTAGCAGCTGAGGCTTTGGGGAAAGAGCTTAGCTTTTTACTGATCCACTGTGTCTCTTGTGTTTCATTGCTTTAAAATGTGGGTTAGGACCCACTCAGATGACTTTACAGCTGTCACTGAGTTAGAGCTCATAATATATTCAAACTCTTGTAAAAACTAGAGCTAAATGTCAGTCTAATGTCTTGGCTCAGACTTCCTAAGAGTAACAAAACTCCACTAATTTTTAAATATCCCTCGTCCTAGACTAACTTTTCTTGCATTTTCTAATAGTAAAGAATAATAACTCTCATATATTTTAGTGTTTTCTTTCTACAAATCAGTCTTAAACATCTCTCTTCTGTTACCAAACATCCTTGTCAATTTGATAATCAAAAGTCATTTTTTTCCATGAGAGAAAAATGAAACAAAGAACTATTCAGAATTACTGAAGAAAACTTTTATCTTAACTAAAACTGAGCATTCTGACTTTAGGGTGATGTTTATGGTGTTGGCCACTGGGCCCCTGCTGCCTTGTGGACTGTGTGTTGCCACAGACGATGAGTTCGCAATGATTTTGAGTTCATGTGTCTTCCTTTCCTTTGCAGCTATTTAAGTAATATAGGCTAATTTGTTTTCTATAG
Seq C2 exon
TGTCGGTGGGAGGCAGCAAAGCCAGCCCCCTTCCAGGAAGCCTGCAGCGCTCTCGAAGTGACATTGACGTGAATGCCGCCGCCGGTGCCAAGGCGCATCATGCTGCTGGACAGGCTGTGCGAAGTGGGCGTTTAGGCGCAGGTGCCCTGAATCCAGGTTCCTATGCATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161:ENSRNOT00000012545:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCTTTTTCATCTAAGTGGTCA
R:
CTAGTGATGCATAGGAACCTGGA
Band lengths:
230-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]