BtaINT0039154 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012815 | CLEC12A
Description
C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr5:100398325-100401104:+
Coord C1 exon
chr5:100398325-100398428
Coord A exon
chr5:100398429-100400825
Coord C2 exon
chr5:100400826-100401104
Length
2397 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTTTATTTTCTCTTTCAGGTT
3' ss Score
13.98
Exon sequences
Seq C1 exon
GAATTTATAAAATCTCTGAAGTTAAATAACTATTGGTTGAGATTATCTCCCAGGAAAGATAACACAAAATACGGAAACTTGGATACAATTTTCCCCCTCAACTG
Seq A exon
GTAAGTCTTTATTCTTGTTGAATTTTAATAGCTGGTTTCAGTAAAGGTGAATTTTCTCAGGGACACTGTAGCTTCTACTGAAATTGTATCCTCAAAGAACCCTTTCCATCAGACTTCTATGATATGTTTAATAATGAGAAAATTATTGCAAAGGGCTTCCCATTATCTTGACAACTACAAGCCAAATAAGGAAGGATTTCTGTGAATAATGCTTTTATCTAAGAAAACTATAGAGGCCAACACAATTCACTGGACTTGAATATGTACTTAAAATTGTGCAATGCTAGGATTCTAAAACAAGTGAAAGAGGATGCACAGACAAATTAATTCAACAGATGAAAAGAATAAAATGTGTAAATGCTTCAGTAATAATACTCAGAATAACAAAAAATAGATTTTATCTTTGAAATTTATGTTATAACTGAAATTTGAAGTGGACATTTTTGAATAAAAAATTTAGAGATTGACTAGAAGAGCACTTCTGGTAAAGAGAATAAACTGAACATGGGCATGATATAAAAAAATATTTTGTTGCACAACATAGTAAGAAATTGGTTATAAATATGCCAGTATAAATGGACTCATATGTTGTATTTGTTCTGCTTATAATGGGGTGGGGTCAAGGCGTATATAAAAAGAATGCCAAAATTCATTTGTGTTTTATAATTCCTTAAATTTAGGAAGCAGGCAGGATTCAACTAAAGAAAGAAACAACAGCCTCAAACTGCTAGATGTTGTTTAGTTGCTAAGTTGTGTCTGACTCTTTGTGACCCCATGGACCGTAGTCTGCCAGGCTCCTGGATTTCCCAGGCAAGGATACTGGAGTGGGTTCCCATGCACTACTCCAGGGGATTTTCCCAACTCAGGCATTGAACCCAGGTCACCTGCATGGCAGGTGGATTCTTTATCACTGAGCCATCGGGGAAGCCCACTGGATACCCTTACAATCTCACAATTTTGTACAGATTTGTTTGTTGAGGACACATGAAACTGGAGTGAGCTCCATACATATGTGCTGGGGTGCTGACACTCTGAATCTAAACCCCGAGATTCCTCCATATACATGACGTTGGGCAAGGCAGCAAATAGAATCTTTGGTTGTGTTTTGATTATTGTTTTGTTGTGTCCTGCTTGTTTTTTTCCATCAGATAGAAATAGTGTGGTAGGAATATGGGTCATAAAGATACTGCAGCTCCATCTTTGTCAGTCTGCAATAATAGCACAGAACAGGGGATATGCTTAGTTGCTCAGTCCTGTCCAACTCTTTGTGATCCCATGGACTATAGCCCGCCAGGCTCCTCCACCCATGGGAATTCTTCAGGCAAGAATACTGGACTGGGTTGCCATGCCCTCCTCTGAACAGGGGATACGATTTGCACAAAGGAGAGAAAGATGTATATTCTAAAGGTCTCATTTGGAGTGAAATTCTAGAAGTAAATATAGTGTGAGCATAAAGGGACAGTATAGATGTAATCTTGTTTCAAAAGCTAGAGTTTCCTTGTGTTTATTTGTAATTATTGCTAATGGGAAAGTAAACTATAATGGGATGGAAAATGCAGTGGCTATTTCAAATCACAAGAAATAATATAGAAATAGAAATATATCCTAGTATATGTATATAATACACTTTTATATGTATCATGTACATATAATATATGTAATTTTTTTTTAATCTTTGATGTTATTTTGGGATTTGTTCCTGGAAATGAGCTAGGATTAATATAATCTGTGTTATGCTACTTCAAATAGAAAATTAAAGTTATTTGAGGAACTTATTTATTAATAATCGTTAGTTATTAATCCAAGTGGTGATGCTACATTTTTTTCCCGAAGATAATGTATTCAGTTTACAAGTTTGTCTTTGATCTCTAGTCTCTCAACAGTCATCTTGTGTTAGGACCTGGCAGTCATTCAGGGCTTCATCATAAAATTTCTGGAAAATGGCTGAGGGAAATGTCACTTGGAGATGATGCTGAGCTTAAGGTATCACAGATGAGGTTAATTTCTGATTTTGGTGATTATGAAAAATATTTGAGGAGGACAGCCTCAAAATTTATTACTTGTCCAGTTTTCCTGAAGAATCTAATGGAATTGCATTACTTTATTCATACTAGTTGCTGTGGAAGGGAGGTGCTAGGTCTGGAAGAAAAGGACAACAAATACTCCAGCTGTGAGAAACTAGGAAAGCCTGAGAGAAATCAGGCAGTGTGTGGCATTGCACATTTGTCCATAAAAATAAGTAACATGGACACTTGCCATTCTAAATAATAATTAAAATTCATTTTAGACAACACAGACCATAGGAGAAGTGATATGTTGGAAAAGTGATTTTTTTTTTCTGGGACTGTGTTTCAAATGTTTGACTTGCCAAGTGTAATTCTTTATTTTCTCTTTCAG
Seq C2 exon
GTTTACAAGAAATACAAGTGTCATAAATGATCAGATGTATTGTGGATATGTATATTATGCAACCTTTTATTATATTAAGTGCACTGAAACTAAAAATATTATATGTGAGAAGCTTGCCCAACCAGTGAAGACTGAGAGTATACTAATGAGTGAAATATTGGATGGAAGAAAATAGTTAGTGCAATTATTTTGTTCCAAGTATTATCTTGCACTTAAAGGACACTTTGGGGACCATACATCTTATTGACCACATCTATAGAATAAAGATACAGTACGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012815:ENSBTAT00000017022:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.0=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]