HsaINT0036114 @ hg38
Intron Retention
Gene
ENSG00000172322 | CLEC12A
Description
C-type lectin domain family 12 member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr12:9982020-9985595:+
Coord C1 exon
chr12:9982020-9982129
Coord A exon
chr12:9982130-9984869
Coord C2 exon
chr12:9984870-9985595
Length
2740 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTTTACTTTCTCTTTCAGGGT
3' ss Score
13.14
Exon sequences
Seq C1 exon
GAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTG
Seq A exon
GTAAGTGTCTATTCTTGTTAGAATTTTATAGCTGGGTTTGAGTAGAGGTATTTTCCTTAGGAGCACTGTAGATTCAAATTAAAACCAGCTTCAATTGAAATTGCATGCTAAAAGAACCCTTTTCTATCATGCTTCTTTGATGTATTTTCTAATACATAAAGTTACCATAAATGCCTTCTCATAATTTTGACAAGTAACTAACAAAATTACAGCAGCCAAATTATGGAGAACTCTGTAAATAATTTTATCTAAGAAAAATTGTGGAAGCCCAGAAAAGTCATTGGACTAACAAGTACTTAATATTGTGATAAGTTCTAGGGTTCAAAGATGAATGAAATATTGATTCATCATTAAAGTTACTTAACCATCAATTTTATGTGCAGACTGATTGAATTATGCTAGAGATAAAGAGAATATAGTGTGATAAATGCTTCAGTAAGAATACACAGACTAACAAAACATAAATTTTTGCAATGATACTTTTGTTATAAATGACACTTCAAATGGGCATTTTAAAAAGTTTATGGATTTAGGGGGTACGATTGCAATTTTGTTATATAAATATATTGCATAATGATGAAGTCAGTGTTTTCAGTGTAACCATAACCTGGATAGTGTACACTGTACCCAACAGGTAATTTCTCATTCTTTATTTTCTTCCCACCCTCCTACTTTTTGGAGTCTCCAATGTCTATTATTCCACTTTTTATGTGCATGTGTACATATTATTTAGCTCCCACTTAAGTGAGAATATGCAGTATTTAAATTTACGTTCCTGAGTTATTTCATTTAAGAGAATGGTCTCCAGCTCCATCCATTTTGCTGCAAAGTCATGATTTCCTTCTTTTTTATACTTGAGTAGTATTTCATGGTGTATACACTCTAAAAGAAAGCATGGTTTCATGTTTTCTTATGCAATAATCCGTTGATGGACACTTAGGACAGTTCCATGACTTTGCTATTGTAAATAGTTCTACAACAAACATTTAAGTGTAGGTGTCTTTTTTTTAATATAATAATTCCTTTCCCTTTGGTTAGATACCCAATAGTGGAATTGCTGGATCAAATGGTAATTCTATTTTTAGTTCTTTGAAAAATTGCCATAGAGTTTACACTAACTTCCATTCTGAAATGGGCATTTTTGAATGAAAAATTTAAAGACTGGTTTAGAAGAGCACTTCAGGTGAAAGAATATAAACTTCAGCTTAATATATCACATATATAGTATAGATAAAATAATTTGTTGTGTAGTATAATGAGGAATGTGGTTATAAATATACTATTTTAAGTGGATTTATACGTTGTATTTGTTCTGCTTATAATGGGAAAAAAAGTCTTTACATATAAAAATAGTGGCAAATTCCATTTGTATTTTTTAATCTCTGAAATTTGGGAAGCAGAAAATATCAAACGAAGAAAGAAACCAGAGTCTCAACCTGCTGGACACTATTGGAAGTCCATCATTTAACACGTTTTTAGTATATACTTTTAGCAGGAGACAGCTCTGAGTCAACTGTGTTGAGGTGCCACCACAGCGAGTTTAGGCACTCAGATCCCTGCATACTCATCACATTGGGCCATAATGGCAAATAGAATTTTTTGTTTTGTTTTGTTTGTTTGCTTTTTCTTTCACATAGAAATAGTAAGTGTAGGAGTGTGGGTCAGAAAGAAAAGGTGGCCCTACCTCTGATGGTTGGCAATGATAGGATACAATGGGAGATAAGCTATCTACAAATGGAGTGGAGAAGGATATATATTTCAAAGGCCTAATTTGTAGTGAAAGACTAGAGACAAAGGTAATGTGTGTGTCAGGAGAGAGTACAGATGGAATCTTGTTTTGCAAACGTAGAATATGTATGTGTTTGTAATTATTGCAAATGGAATGGTAATCTATAATGGAATGGAAAACATTGTAGATATTTTCAGTTATCAAAAAGAAAACTGAAAAAGTATATAATAATTGTATGTATGATATATATATGTGTGTGTGTGTGTATATATATCTTCACTTTATAACTCTGTGTTGTTTTGGGGTTTGTTTCTGAAAGGGGGTTGTAATAAATGACATCTGTACTATGTCACCACAAATAAATCTCATTCTTAAACATTTAATTGATGAACTTATTTACTGGTTGATATCATTATTTTTTTACCCAAGTATTGATGCTAAATTAATCTAAAAGGTAATATTTTTAATTTATAAATTTGTTTTTAGTGCATAGTCCCTGATCACTAATCTAGTATTTATGGGCTGGTCATTAGAACTTCAGAGTAAAATCTTTTGCCAAGTGTCACTTAGAGATGATGTTGAACTTCAGGTGTCATATATCTCAGGTGAATTCCTGACTTTGATGATTATAAAAAGCACTTGAGGGAGAAAGGGTCCAAGTCTTACTACTCCTAGCCAGTTAGACTAGGAGAATCTTATGGAATGGTATTATTCCAAATTATATTATATATGAAGGGGCTGGGGTGCTAACTCTGTAAGCAAAGGACAGCAAATATCAGATGTTAGAAAGTGGAAAAAGCAGGGAGAAATGAAGCAGTATTTGACATTGCATATGTGTTAACATAAACAATTAACTCGGACATTCTTGATACTCTGAACATTAAATTAGATTTAGTTTAAACAACACAGAGTCTAGGGCAATAATATCATGTTGGAAGTGTAATTTTTTTTTCTGTGAATATGTTTCAAATATCTGACTTGCCAAGTGTAATTCTTTACTTTCTCTTTCAG
Seq C2 exon
GGTTATAAGAAACGCACCTGACTTAAATAACATGTATTGTGGATATATAAATAGACTATATGTTCAATATTATCACTGCACTTATAAAAAAAGAATGATATGTGAGAAGATGGCCAATCCAGTGCAGCTTGGTTCTACATATTTTAGGGAGGCATGAGGCATCAATCAAATACATTTAAGGAGTGTAGGGGGTGGGGGTTCTAGGCTATAGGTAAATTTAAATATTTTCTGGTTGACAATTAGTTGAGTTTGTCTGAAGACCTGGGATTTTATCATGCAGATGAAACATCCAGGTAGCAAGCTTCAGAGAGAATAGACTGTGAATGTTAATGCCAGAGAGGTATAATGAAGCATGTCCCACCTCCCACTTTCCATCATGGCCTGAACCCTGGAGGAAGAGGAAGTCCATTCAGATAGTTGTGGGGGGCCTTCGAATTTTCATTTTCATTTACGTTCTTCCCCTTCTGGCCAAGATTTGCCAGAGGCAACATCAAAAACCAGCAAATTTTAATTTTGTCCCACAGCGTTGCTAGGGTGGCATGGCTCCCCATCTCGGGTCCATCCTATACTTCCATGGGACTCCCTATGGCTGAAGGCCTTATGAGTCAAAGGACTTATAGCCAATTGATTGTTCTAGGCCAGGTAAGAATGGATATGGACATGCATTTATTACCTCTTAAAATTATTATTTTAAGTAAAAGCCAATAAACAAAAACGAAAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322:ENST00000304361:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.6=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(35.6=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains