MmuINT0037120 @ mm9
Intron Retention
Gene
ENSMUSG00000053063 | Clec12a
Description
C-type lectin domain family 12, member a [Source:MGI Symbol;Acc:MGI:3040968]
Coordinates
chr6:129309426-129315321:+
Coord C1 exon
chr6:129309426-129309529
Coord A exon
chr6:129309530-129313911
Coord C2 exon
chr6:129313912-129315321
Length
4382 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
ACTTATTTTTTCTCTTATAGGTC
3' ss Score
12.78
Exon sequences
Seq C1 exon
GAATTTATAAAGTACAAGAAGCTACGCTATTTTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACACAATATCCACTAAGTGAGAAGATGTTCCTCTCTGAAGA
Seq A exon
GTAAGTCTTTGGTCTTGTTGAATTTTTATGGTTAATCTTGAATGGAGACAATTTCTTCAGGAGCTTGGTAGATTGCCATTAACAGCAGCTTCAGTAGACACCACTTTTTTAAAGGCAACTGCCCCATCAGACTTCTGGGAAACCTACATTTGATTATGTAGAGAGTTGCCACACAAACCCTGCCATTATTTTGGCAAATCTCCAACAACCTACAGTAACCAAATTACAGGAACTTTTTTTTTTTTTTTTAATTACTGCTTACGGTTAAGAAGAGTGGAGCAAAAACCATTCACTAGATACCTTTAAGTACTTAATATTGCACGATATTCTGGAATTCAAAAGTGAATAAAAGATTGACAACTTTAAATTAGTCATCTTTGAGCTATATGTATAAGTTTGTGTTGAGAGTGCATGCATGTATGTTTGTGTGTGTGTAGTACATGTATGAATGGTGCACTTATATGTGATGCACATGTGGTATGTGGGTATGCGTATGTTATGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATATCTATCTATCATCTATCTATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCTAGTGCTTCTGGTGGAAATCAGAGGACAAATTCTGGTGTTATTTTTTAGATGTTCTCTACTCTCTCTTTCTTGAGGCAGAATCTGTCACTTGCCTGGAACTCTCCAACAGTGTAGGTTTCAGGGAGCGCCGGTGATCTGCGTGTCTGTGTCTTCCTAACACTAGGATTATCAGTGTGTGTTACCAAGATCAGATTTTATTCATGGGTTCTGGGGATTGAACTCAAGTCCTGTGCTTGCTAGGGAAGGACTTGGCTGATTGAACCATCTCCACAGTCCTGAAGTGGAGACTGTTGAGTCTAGTGATCGAAGACTCAATGGACAGACATTATAGCATCAAGAATTATATGAACTTAGTACACATAGGCTGCACCCATGGCTATATATGATTTTATAAGCATATTTAAGAAGGTATTTATAAATATACTGCTACAACTGGAATTGCACATTGTATTTGTTCAGCTTTCTTTTTTAAAGATTTCTTTCTTTAGTTATTTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTTGTTGTTGGGAATTGAATTTTTAGGACCTCTGCTCACTTCCGTCAACTCCACTCACTCAGTCCCTGCTCGCTCCTGCCCAAAGATTTATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAAAAGAGAGCGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAAAAGAGCAGTCAGTGCCCTTACCCACTGAGCCATCTTGCCAGCTCTGTTAAGCTTTTTAAATGAGAATAAATGACGGTTTTATTTGCAGATAAAATCCCACTATATTTATTTTCTTTGAAATTTGGGAAACCCAATATGAGACTGGAAAAAGAAATTCTCAGTCTGCCAGATATTGATTCAGGCCCCACTTTTGTCATGAGGTGCAGAAGAGTCAGTGCTCACAGAAGCTGTAACAGGGTGTCTGAGACCTTGCACAGGACTTGTAGGTAGTTATGGGCTGTGAGCTAGGAACTAAACTTGACTTCTGTGCAAGAGCAGTGTGCACTTTAACCACTGAGTCATCTCCCTAGATCTTATATTGGCTAGGCAAGAACACTACTATCATGTTGCATTTCAAGCTTGTTAGTTCTGTTAGATCAGGATGCATCAAATAGGAAGTCATCCAAGGCCACCCTGCTGAAATTCTACCATGCGGAGGCTAAGCACAGTGACTTCTGCATGCTCACCACTGTAGGTCATGCCACAAACACTAGCTTCTGTTTCATGTTGTTCTTCCACTCAGCTAGAAATAAGTGTAGGAGTGTGGGTCAGAAAGGCAATGCAATGACAGGAATGGGGATAATTCCACATCGAGGAGAGATGGATGGAAGTCTCAAAGGTCCCATTTGCAGGGAAGCAGTACAGCCAGCATCAAGATGTGAATTAGGAGGGAAGACTAGGGGAGTCTTAATCTTTATAAAGAAGAATAAACATACATTAGAAATCACAACAAAAGAGAAGATAAGGCATTAAGAGCAGTAGATGTTTGACATTGTCAAACAATCCTTAAATAATAAGTGTAAGATCGTCATTCATGTGACACATGGGTGTGTGTGTGTGGGGTTGCATGTGTGTGTGTTTATGTGTATGTGTGGGGTGGTTTGTTTTGCGTGTGTGTGGGAGGGGGTGTATGTGTGATGCATGTGATGTGTGGTGTTATGTGTGTGTATGTGATTGATATGTGTGGTATGTGGTATTTTGTGTGTGTGATATGCCTGTGATGTGTGGGTTTTGTGTATATATATATATATACACACACACACACACACATATATATGGTATGGTGTGTGTTTTTTTGTGTGTGTATGTGTGAATGGTATGTTGTATAGTGCTCTGTGTGTATATAATTTTGTTGTTATTATTAGTGTTATTTGGTTTTTTCTGGAAGAGGGTGATGTTTACTTTGACATAATGGAAAAATCTCATTTTTTTCAACATTTACTTTAATTCTAATTATGTGTCTGTGTGTATGTTTCTTTATATGAGTATTCACACATGATTTTAGGTATCTATGGAGGCCAGAAGCATTGTATAGCCTAGAGCTGGATTTATAAGTGATTGTGAGCCACCTAATATAAACTAGGAGCTAAACTCAGATCCTCTGGAATTTCCATCTTAACCATAGAGCCATTTCTCCAGCTCCCTGGAAATCTCATTTTTGAAAATTTAGCTTGGTACACTCTTGCACAGTCTTAGGGGTAGACCTGACTAGGATTGCAAGAGAAGGAAGAAAAGATAAGCACCTAGATAGATAGAAAGTCTAGGCTGTCAGATGGAAAAGCTGAGGCCCCTCAGAAATTCACTCTGTTTATTATATACTGTTGGATGAGGTGGTGGGGTGTTTCAGGTAGATAAACAAGGAGCCAGGGATTATTGTATGCAGCTAAACAAGGAGGCAGTTTCAGTAGGAGCAGCCTCTGAAGGGGAGTGATCTTCAGGCCACAAATATCCAGGGGGAGGATGTCATGGTGAAAATTTTCTGCATATGTCATCAACATCAGCACACAGACCAGAGGAAGGCTTTGTCTGAGGGTCTGAGGCAGTGGTCCTTAACATGGCCAGCTCATGGCAACAACATACCCACTCAAACCTTCCCACACTCCAGGCTTCTTCTGCTCCTCATATGAACTGATGAACTTATTTGATGACTTTTATCAGTCTAAGAGTCAATGTCATGTTTATCAGAACGACAATATGTTCAACTTATAGATATGCATTTATCATCACTTACCCCATATTTCAGGCTACTAGTTAGTAGGGCTGCCTGAGATATTGCTATTGGGAACTATCACATGAGAGACAGTGCAGACTTGAGGTTTTCTTTCTTCTTCTTCTTTTTTTTTTCACACACATGCACACACACACACACACACACACGACTTAGGTTAGAGAGAAACATTTAAAATGTAAATAAAATAAAAACGAAAAAGATAAACACACAGAGAAAGAAAAGAAAAGCTAAGGTATGACTTTTATGAGGAAAGAAACTTTTAAAGATGCCATTAAGTTCACTTCTGTTGATCATCTACTGATGGGCATGCAGCCTACCCTTCAAAGAATAGATTCCCCAGTGAGACTTCCTTAGGAAAAAACTGTAATTTTCATTTGCAAGTGATCATCAATTGGAGATAGCTTCTGAGTCAGGGATGGTGGCATGTGTCCACTTCTCTTTTTAGTTCACTCATTGGTAAGTGGATATTTGCCCAGAAACTTAGAATACCCAATTTGCAAAACACATGCAACTCAAGAAGAAGGAAGACCAAAGTGTGGAAACTTTGCCCCTTCTTAGAATGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCAGAGCTGAGACAGAAGGAAGGACCATCCAGAGAGTTGAAGTTTTCTAAACTGGGTTTATGACATTATTCTAATTCCTATCAGCCACAGGAAGAGAGGCTACGTCTGGAATCAAATGACAGAAAATATTCCAGAGGTGGGAAATCAAAAAAATAGTTTTTCCCATCACATATTCTTACCCATCATCAACTGAAATTTAACTTAGACAGTAGATCACACAACCAATGTTATTTTGAAAATTCTCTTCTGTGGGTATAATCAAAATACAACTTTCCAAGTGTACTTATTTTTTCTCTTATAG
Seq C2 exon
GTCTGAAAGAAGCACAGATGACATAGATAAGAAGTACTGCGGATATATAGACAGGGTCAATGTTTATTATACATACTGCACTGATGAGAACAATATCATATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAAGTGTGTTGAATGGCCTCCCAGAGGATAGCAGGTAGCTACTCTGAGTTGCTTGTCCCTAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAGGGCTCATTTGAATACTTGGTCCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGGAGGTTGTGTCATTGAGAGTGGGCTTTGCGTTTTCAAAAGCCCATGCCATTCCCAGTTAGTTCTCTATCTTGTGCTTGTGGATTGAGCTGTGAGCTCACAGCTACTGCTTAGGACCTTGTCTGCCTGCATGCTGCTATCCTCCTCACCACAATGGTCATGGACTCTAACCCTCCCAAACCAGGAGCCAAATTAAATGCTTCTTTTTATAAGTAACCTTGGTCAAGGTGTTTTTGTCACAGCAATTGAAAGGTTGCTAAGACATCTGTCACTCAGAAGAACTGTAGGCAGTGTGCGTCTCCTCTCACACAAACACAGTAGCAGCAGTACAACTACAGTCCTGCCTCTCTGTAGTGTTTATGTCTAGATTTCTTTGTCTCATTTGCTGACTGCCACGATACTAAGTCATAGCTTTTCACCATGTATTTTCAGCATACAATGCGCTGAACACAAGACCATGCAGCCTATTTCTTCTCTTTTTTTTTTCCCCAAAGATAAACCAGGCAAATTTCAACCTCAAAGAAAATAAAGTCTGGAAAAATATAGAAAGCATAGTACGATAAGAACAATTTGTATTAAAGATGTATAAATACTTTAAAAAGATGTGAGGGAAAATAAACTTTGCAATTGACATAGCGAAGCATTTGATGAGTACTTTATACCCTGTCGTAATAAAGCTTAATAAACTAGGAGTAGATTTCCCAAATACAATCAAGCTTTGACATGAAATAAACAGCAAGCAAATGAACAAAACTCTGAAGTTTGAATTAACATCATAGTTCTAGCAAGAGAAAACATATTCCTAGTTTTAGAATAAGATAAGAATGAACGTTATTAAATCACTTCATTCGTCATTATTAATACGAAGAGCAGAACACCAATGGATGTTAAAAAATGAAGCTGGGCAAAGATCAGAATTAGACCAAAGCTGGGAGGACAATAGATGGGAGTATCTATTGCTAACCCACCCTGGTTAGTGAGGCCAAGTGGACTGAAGAAAATACCAGAGATCCATGTGGGGACACCAGGGGATGCCACACATTTGGGTTCAGGAGTAGAGCGATCAAAGCACTTCTCATTTGTATTATTAAAGCAATCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053063-Clec12a:NM_177686:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=63.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: