HsaINT0036114 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr12:10134619-10138194:+
Coord C1 exon
chr12:10134619-10134728
Coord A exon
chr12:10134729-10137468
Coord C2 exon
chr12:10137469-10138194
Length
2740 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTTTACTTTCTCTTTCAGGGT
3' ss Score
13.14
Exon sequences
Seq C1 exon
GAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTG
Seq A exon
GTAAGTGTCTATTCTTGTTAGAATTTTATAGCTGGGTTTGAGTAGAGGTATTTTCCTTAGGAGCACTGTAGATTCAAATTAAAACCAGCTTCAATTGAAATTGCATGCTAAAAGAACCCTTTTCTATCATGCTTCTTTGATGTATTTTCTAATACATAAAGTTACCATAAATGCCTTCTCATAATTTTGACAAGTAACTAACAAAATTACAGCAGCCAAATTATGGAGAACTCTGTAAATAATTTTATCTAAGAAAAATTGTGGAAGCCCAGAAAAGTCATTGGACTAACAAGTACTTAATATTGTGATAAGTTCTAGGGTTCAAAGATGAATGAAATATTGATTCATCATTAAAGTTACTTAACCATCAATTTTATGTGCAGACTGATTGAATTATGCTAGAGATAAAGAGAATATAGTGTGATAAATGCTTCAGTAAGAATACACAGACTAACAAAACATAAATTTTTGCAATGATACTTTTGTTATAAATGACACTTCAAATGGGCATTTTAAAAAGTTTATGGATTTAGGGGGTACGATTGCAATTTTGTTATATAAATATATTGCATAATGATGAAGTCAGTGTTTTCAGTGTAACCATAACCTGGATAGTGTACACTGTACCCAACAGGTAATTTCTCATTCTTTATTTTCTTCCCACCCTCCTACTTTTTGGAGTCTCCAATGTCTATTATTCCACTTTTTATGTGCATGTGTACATATTATTTAGCTCCCACTTAAGTGAGAATATGCAGTATTTAAATTTACGTTCCTGAGTTATTTCATTTAAGAGAATGGTCTCCAGCTCCATCCATTTTGCTGCAAAGTCATGATTTCCTTCTTTTTTATACTTGAGTAGTATTTCATGGTGTATACACTCTAAAAGAAAGCATGGTTTCATGTTTTCTTATGCAATAATCCGTTGATGGACACTTAGGACAGTTCCATGACTTTGCTATTGTAAATAGTTCTACAACAAACATTTAAGTGTAGGTGTCTTTTTTTTAATATAATAATTCCTTTCCCTTTGGTTAGATACCCAATAGTGGAATTGCTGGATCAAATGGTAATTCTATTTTTAGTTCTTTGAAAAATTGCCATAGAGTTTACACTAACTTCCATTCTGAAATGGGCATTTTTGAATGAAAAATTTAAAGACTGGTTTAGAAGAGCACTTCAGGTGAAAGAATATAAACTTCAGCTTAATATATCACATATATAGTATAGATAAAATAATTTGTTGTGTAGTATAATGAGGAATGTGGTTATAAATATACTATTTTAAGTGGATTTATACGTTGTATTTGTTCTGCTTATAATGGGAAAAAAAGTCTTTACATATAAAAATAGTGGCAAATTCCATTTGTATTTTTTAATCTCTGAAATTTGGGAAGCAGAAAATATCAAACGAAGAAAGAAACCAGAGTCTCAACCTGCTGGACACTATTGGAAGTCCATCATTTAACACGTTTTTAGTATATACTTTTAGCAGGAGACAGCTCTGAGTCAACTGTGTTGAGGTGCCACCACAGCGAGTTTAGGCACTCAGATCCCTGCATACTCATCACATTGGGCCATAATGGCAAATAGAATTTTTTGTTTTGTTTTGTTTGTTTGCTTTTTCTTTCACATAGAAATAGTAAGTGTAGGAGTGTGGGTCAGAAAGAAAAGGTGGCCCTACCTCTGATGGTTGGCAATGATAGGATACAATGGGAGATAAGCTATCTACAAATGGAGTGGAGAAGGATATATATTTCAAAGGCCTAATTTGTAGTGAAAGACTAGAGACAAAGGTAATGTGTGTGTCAGGAGAGAGTACAGATGGAATCTTGTTTTGCAAACGTAGAATATGTATGTGTTTGTAATTATTGCAAATGGAATGGTAATCTATAATGGAATGGAAAACATTGTAGATATTTTCAGTTATCAAAAAGAAAACTGAAAAAGTATATAATAATTGTATGTATGATATATATATGTGTGTGTGTGTGTATATATATCTTCACTTTATAACTCTGTGTTGTTTTGGGGTTTGTTTCTGAAAGGGGGTTGTAATAAATGACATCTGTACTATGTCACCACAAATAAATCTCATTCTTAAACATTTAATTGATGAACTTATTTACTGGTTGATATCATTATTTTTTTACCCAAGTATTGATGCTAAATTAATCTAAAAGGTAATATTTTTAATTTATAAATTTGTTTTTAGTGCATAGTCCCTGATCACTAATCTAGTATTTATGGGCTGGTCATTAGAACTTCAGAGTAAAATCTTTTGCCAAGTGTCACTTAGAGATGATGTTGAACTTCAGGTGTCATATATCTCAGGTGAATTCCTGACTTTGATGATTATAAAAAGCACTTGAGGGAGAAAGGGTCCAAGTCTTACTACTCCTAGCCAGTTAGACTAGGAGAATCTTATGGAATGGTATTATTCCAAATTATATTATATATGAAGGGGCTGGGGTGCTAACTCTGTAAGCAAAGGACAGCAAATATCAGATGTTAGAAAGTGGAAAAAGCAGGGAGAAATGAAGCAGTATTTGACATTGCATATGTGTTAACATAAACAATTAACTCGGACATTCTTGATACTCTGAACATTAAATTAGATTTAGTTTAAACAACACAGAGTCTAGGGCAATAATATCATGTTGGAAGTGTAATTTTTTTTTCTGTGAATATGTTTCAAATATCTGACTTGCCAAGTGTAATTCTTTACTTTCTCTTTCAG
Seq C2 exon
GGTTATAAGAAACGCACCTGACTTAAATAACATGTATTGTGGATATATAAATAGACTATATGTTCAATATTATCACTGCACTTATAAAAAAAGAATGATATGTGAGAAGATGGCCAATCCAGTGCAGCTTGGTTCTACATATTTTAGGGAGGCATGAGGCATCAATCAAATACATTTAAGGAGTGTAGGGGGTGGGGGTTCTAGGCTATAGGTAAATTTAAATATTTTCTGGTTGACAATTAGTTGAGTTTGTCTGAAGACCTGGGATTTTATCATGCAGATGAAACATCCAGGTAGCAAGCTTCAGAGAGAATAGACTGTGAATGTTAATGCCAGAGAGGTATAATGAAGCATGTCCCACCTCCCACTTTCCATCATGGCCTGAACCCTGGAGGAAGAGGAAGTCCATTCAGATAGTTGTGGGGGGCCTTCGAATTTTCATTTTCATTTACGTTCTTCCCCTTCTGGCCAAGATTTGCCAGAGGCAACATCAAAAACCAGCAAATTTTAATTTTGTCCCACAGCGTTGCTAGGGTGGCATGGCTCCCCATCTCGGGTCCATCCTATACTTCCATGGGACTCCCTATGGCTGAAGGCCTTATGAGTCAAAGGACTTATAGCCAATTGATTGTTCTAGGCCAGGTAAGAATGGATATGGACATGCATTTATTACCTCTTAAAATTATTATTTTAAGTAAAAGCCAATAAACAAAAACGAAAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
-CLEC12A:NM_138337:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)