BtaINT0039245 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014546 | CLEC7A
Description
C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:HGNC:14558]
Coordinates
chr5:100290251-100295523:+
Coord C1 exon
chr5:100290251-100290369
Coord A exon
chr5:100290370-100294656
Coord C2 exon
chr5:100294657-100295523
Length
4287 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATTGCATTTTATTTTAACAGGTT
3' ss Score
8.7
Exon sequences
Seq C1 exon
GAGTTTATATCAAGGCAAGTGTCTTCCCAGCCTGATCATTCATTTTGGATAGGGCTTTCTCGCCGTCAGACAGAAGAACCATGGCTCTGGGAGGATAGCTCCACCTTGTTGTCTAACCT
Seq A exon
GTAAGTATCCAGAGAGACAAAGCTTCATACCTTCTCTCAGAGAGGTAAGAGCATGTCACACAGTTAAGGATCCAATCTGTTGGCCATAATAAGGAAGAGAGAGAAAAAGAAACATAGTGATGGGAAGAGACACCGAGCCAGGGGAAAAAAAAGTAAAACAAGAGAATAGAGGAGGACTTACAGGTCAAAAAGTGTTGAGTGGTCACTTCAAGATATCAACACAAGTGGTTCCTCAGCCTTCTTACCAGGAGGGCGTGTGTTCGAAGCTTCCCAGGAAGGAGCAATCACTCAGTGTAAAGATGTGGTTAAGAGCAGGGCTTTGAAGTCAGTTTTCAGCCTAATTCTGGTCCTCTCACTGTGTGGAACCGGACAAGTTGCTGAATCTTATCTGTGCCCCCCTTTCCAAATCTGTAAAGGAGAATAAAAATAATTCCTACCTCTATAGATTTTGAGATAAAAGTAAGATCACTTGGCACAGTGTCTGGCACATACTTTTTACCATGGGTTCAGATAGAGAAATTGTATGAGTAAGCAGCTTGGGGCTCATCATCCTGGGGATATAATTTTTTCCTCCCACCTTCCACCTTGCCTGGTGGCTCAGATGGTAAAGAATCTACCTGCAGTGCAGGAGACCCGGTTTAGATCCCTGGGTGTGGAAGATCCCCTGCAGAAGGAAGTGGCAACTCACTCCAGTATTCTTGCTTGGGAAATTCCACGGACAGAGGATCCTAGTGGGCTACAGTCCATGGTGTGGCAGTTAGACACGACTGAGTGACTAACACTGGCAATAACACTCCACCTGGTGGCAAGATTGAGAAATGCACATTTTTTGTTAGTCTTTTCTGTTGGGCAGGTTTTTTTTTTTTCATTTACCCCTGCACCAAAATAGTCATTTGTTTTCCAGCTTCTGCTGGGTTTTCTGCTACATTCTCATTTCGGATGCATTTATTTCACAGTATTAAATTAAATAAATGGGAACCAACCAACAATTGATGTCATCTCGGAGTCAATAAAAATATAGCCCTAGAAAACAATAGAGATCTATGCGGTTTATTAGATTTTCCCCACAGATTCATGGTTTTCACTGCTTCTTATTCCTCTCTGCCTCTCCTACCTTCCATTTTGAATCATTTTTAAAATCTGAAGAATACATTTGTATTTCCTTTAGAGTTGAAGTTTTATGGTTGAATTCTCTGTGCTTGTCTAAAACTCTTTATTTCAACTTTTCTAAAAAATATTTTGAGTATAAAATTAGAAATCTGTAGCTTTTTTCTCTTAGGCATTCAAAGATATTATTATAATGTATTCTATTTTTATTGTTGTTTTTGAAAGGTCAATTATTTGAAAGCAATATAAGTTTTATGTCTTTTTTCAGTTTTGACGTTTTCAGCCATACTTGCTTCAAATGTTGCTCTTTCCTGACTTTCTACCCTTCCATAATTCCAATTAAATGTATTATAGACCCATTCACAATATCCTATATGTCTCATTTACGTTTTCCTATAGTTTTGTCTTTTTTCTTTAACCTATTTACCTGTCGTACATCTTTCAGTTTCGTTATTTTTCCTCTTCTTCAGTTAAACTGCTGTTAAAAGCCTTGATTAAGCTTTTAACTTTGTTTAATGAATTTTTAAGTTTTATAATTTCTCAAATCTATCCAGTTGCAATTTATAATTCTTAGCTTTTCCAAAACATTCTCAATATTGTCTTTTCACTCCCAGAATACACTGTATAGTTGCTTTACTATTTGTGTTTGATAACCTAGTGTTTTTTACTCATGTGTATCTATTTCTGTTATCTTTTTCTTCTAATTAAAAACATGTATTTATCTGATTGGGTGGGGTCTTCGTTGTAACATGCGGGTTCTTTTTGGTTACAGTATGCATGCGAACACTTAGTTGCAGCATGTGGAGTCTAGTTTCTCAAACAGGAATCGAACCTGGGCTCCTTGTATTGAGAGCGTGGAGGCTTAGCCAGTGGACCACTGGGGAAGTCGCATTTTTCTTCTTATTTTTATTCATTTATTTATTTGTTTTCGTCTATGCCTGAATTGTTTTTGTTGTTGTTGTTGTTTTTAATGCACTTAACATACGTTAAACTTTTGTAGAATTAATTTGAATTTTACAGAGTGGCTTTTCATTTGCTTCTGGCAAGCACTATTGGGTGTGAATAGTACAAACTGTTGAGTATGATCACACTTTGATTTTATACCACTGAACTATCTCGCTTTGGCCAAGCACATTGAATTTATTAACGAACGACCTTGACAAAATATATGTCTTATTTTTCTATAGCACTTGTTTGTGTTGAGTTTTCGTTTGTTATTTTAAAAACTGACTAGTGGACTCCCTAAAGTCGTAAGAGTAGGTCCAAATTAACATCTTGATGTGTAACTATTCATCAGTGACAGTCATTTTAATCTGGCTCTGTACATTCTCCAAAATCTCTTAGATGTCAAAAAGATATTTTGGAGAAGAACACTGGCCAGAATTCTCCCTGAGGCTGGATCAAAGTTGTTTCATGACCTTGGCCTAATTATTTCAACAGAAGAATTCTCTCAATCCTCCATCCTCAGTACCAAGAAGAGATATATGTACAGGATGTACAGAATGTACAAGATGTACAGGATGAAGATGTACAGACCTTAGCTTTTACACTGAGGCTCAGTAATGCCCTTTGAGCTTGACTAAATAACTAACACTTCTCCCTTATGAAACTAAGGGCAAATAGAACAGAGCCATGCTTCTATTTACTCATGGTAATTCTCATAAGTGAAGTTGCTCAGTCGTTCAGGACTCTGCAATCCCATGAACTGTAGCCTACCAGGTTCCTCCGTCCATGGCATTTTCCAGGCTAGAGTACGGAAGTGGGTTGACATTTCCATCTCCAAGGGATCTTCCCAACCCAGGGATCAAACCCTGGTCTCCTGCATTGTGGGCAGACACCTTACCCTCTCAGCCACCGGGGAAGGCCAATTCTCATTGTCTATCATTATATTGCAAAACAATACAACCTTCAGGATGTATTAAAAAATATAGGGTTGTTTGGGACTTCTCTGGTGGTCCAGTAGCTAAGACTCTACATTCCCAGTGCAGGAGGCCCGGGTTCAATTCCGGGTCAGAGAACTAGATATGTCTCAACTAAGACTTCACATCTTGCAACCAAAAATACTGTATGCCACAACTAAGACTCAGAGAAGCCAAATAAATAAAATAATAAGTATTTTTTTTTTAATATAGAAAGTTGTTTGAATTGCTTTTCAATGGTCTTGATATCTGTGATTCTTCACTTAATTCTCAGTCACCATGAGCAAGAACTCTTCTACTTGGTCTACTCACTAAATATACCCAATAATAATTTTACTAAACTGCTACTTTATTTAATAAGTATCAGTTCAGTTCAGTCGCTCAGTCCTGTCTGACTCTTTGCAACCCCATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAAACTCACGTCCATCGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAACTTTAGCATCATTCCTTCCAAAGAACACCTGGGACTGATCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGAATCAATTCTTTGGCGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACTATTGAAAAAACCATAGCCTTGTCTAGACAGACCTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTGATAACTTTCCTTCCAAGGAGTAAGTCATAAGTATACCTCTAGGTAAAAGGTTTAAAGATAAGTAAAGAATTAGTATGTATTATAATTTAATATTATAAAGTATTAAATGATTTTTCTTTTTTGTCAGAGTAGTAGTATTTAATTTTATTTTCAACTAGTAGTATTTCTTAAAAAATTTTTGAGTCCTTTTTATGCCTTAATAGTGAAAGTTGTTATGCTACTATTTGGAAAATTTGAATTTAAACTCAAGGTTTTTTTTCAATAATATGCACTTCGGAAACTCTTTTTAACCCATATCTTTACCAACTATGCCAGTATTGTGGAGACAGTAGATATTAACAGTATTCCCTATGCTTGTACTAATTATCATATTGCATTTTATTTTAACAG
Seq C2 exon
GTTCCAAATCAGAAGTACAGTTACCGAAAAAGACTCATCTCACAACTGTGCATGGATCCATGTGTCAGACATTTACGACCAACTTTGTAGTGTGCATTCATACAGTATTTGTGAGAAGAAGTTGTCAGTATAATGGTGAGGAGCAGAGAGATGTATGTAAGATACTAAGGAGGGTATAAACCCAAACAGAAAAGAGACATATTTGAGGTCAAAATAATTGCTGAAAAAAATATCAAGAGAGCTCAGCCAACTTCAATCTTAACTGAGAAACAGGATGGAAGACTTCGATTTCCATACTCCCCAAGTCTATCCGGTAATCAGTATTGTGTTCTAATTATTAGAGTCCTAGAAATGGAGTCAGAACACCTGACCTTGAATTTTCATTCTATCAATGGTAGAATTTTCATTCTGCCATTCTATTTACCTGGATTAGCTGTGGATTCTTGGTGTTTCAGGAGATCTTAATTTCTGACTATACCAGAGTTGTATTTTGTCCTAAAAAGTGCCACTGGAGTACATGTGCTGTGTTTCCACTACTTATTCTTGCACTTTTAGCAATGAATCAGACACAGATAGAAATATATTTTGAATAGCTAAATGAAAAAAAGAAAAAAAATGCTTTACTAAAATCAGAGCCATTTTATTATTTTAAACATCATGATTATGATCAAAAGCATCATAAAAACCATTAGTTGCATCTTTTTTTCCTTAATTAAATAACCGAGATAATATGTCTGCCATATCTCTAAGAGAATCTTGTATAATGTGAAATTGTAGGGAATCTGCTTTGGTAAGAAAGATTTATCTTTTTAAATACTATCAATCAAAAAAAAGATCTGATTAATAAATATAAAAAAGTAACCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014546:ENSBTAT00000019331:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.4=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]