MmuINT0037273 @ mm9
Intron Retention
Gene
ENSMUSG00000079293 | Clec7a
Description
C-type lectin domain family 7, member a [Source:MGI Symbol;Acc:MGI:1861431]
Coordinates
chr6:129411609-129415591:-
Coord C1 exon
chr6:129415473-129415591
Coord A exon
chr6:129413186-129415472
Coord C2 exon
chr6:129411609-129413185
Length
2287 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
ACTGTACTTTTTTCTAACAGGTT
3' ss Score
10.72
Exon sequences
Seq C1 exon
GAGTTCATTGAAAGCCAAACATCGTCTCACCGTATTAATGCATTTTGGATAGGCCTTTCCCGCAATCAGAGTGAAGGGCCATGGTTCTGGGAGGATGGATCAGCATTCTTCCCCAACTC
Seq A exon
GTAAGTTCCGGTACAGACATGGAGAGGTGGAATCCTACCATGCAGTTACAAAATCTACTTCTCTGGTCACTTATGAGAAAACGGAGTCATGGTGGCGGAGGGAGAGGGAGAAAGAGACATAGAGATGAAGAGAACAGCTCTCAGGGAGGCTGTAAAGGATGCTCTCCTGGTGCTGACTAAGGGATTCCCATGGCATCTGGTCCTTCTGGCCCAGTGAGGAGAGATGCTGTTCAGTGCAGCCTTGGACTTACCTAAGTCTGAGGTAACGATTAACCCAATCTATGTACGTGAGATATTGGACAAATCTCTGTACTTCTTTTATAGCTGCATTCTTTATCCAAAACTGAGAATAGAGTGGCTATTCTTTACAATAGTAAAGTAAAGGGCATAAAGGTAAAATCATTAGCATAATTTTTTTACAGAACCGATGAAAAATGACATCTTATGTCATTATTTCAACTTTATCTTACATTTGTGAACTTAGAATTTCTTCCTAATTGTGTGCTGAAGTCTTTGAAATGTCTATTCATCTGTTCACTAATATTTGTAAATATAAAATTTTATCCCCCTTTCAATGTATATTCCTGCATCCCTGAATCTCCCATTAATGTTAATATATATAGTCCAATTTAATTAAATTTTACTTTTTTTAAATTTTGCTAATGTTTCTCTATCCTCTTTTATCACTTTGGCTAGTGTTGATTCTCATATATATTATTACCTTTCACCTAATTTCTCTGTGTTAAGCTGAATTCTTTCTCTAAATTCTTATGTTGGATGTTTAACTCATCATCTCTAGTCTTTTTTTGGCTTTGGAGTCATTTGGTTCACATGCTTTCTGACTTCCATGGTGAGTTGCTCTTTGATCCAAGACATAGAAATAAATTTCTCACTTTTCACACATACCCATGCTTCTCACATTCCTATTTATCTTTTAGATTTCAGGCTTAGCTCCTCTGTGATCAGAGAACATACTTCATCTGGTGGTAATTCCCTCTTAATTTGTATTGAAAATGTCTACACGGGTCCTCCTATATTTCTTTAAGAGTTTCACTTGATACTTTAAAGCCATATTAAAATATTCATGTGGATTTAGAATTGTTGCATCGTCCTGTTTGATGTCACTTTCCTTCCTTCTTCCCCCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTTGTAATTTACTGATTTCTGTTTTGATTTTTGTTTATTTCTCATAATTCCTCTGGTTTGCCTGTTTTGTTTTGTTTTGTTTTTGTCACTTGCAGCTCACTTTGCTTACAGTATTCTCAATACTATCTATTAACTTCTAGAGGCCACTCAGGACAGTTGTTTTTAAGTCTGTACCTGCTAACTCTGTGTGCATTCTGTTTTTTCTCCTGTGCATCACTCAAGTTGGTTTGTTTTCTTAAATGCCTAATTGTGTTTGAAAGCTGATTATCAGCATTGCATTGTGAACTGTTTAGGGCTTTTGGGGTCAACTTGAAGTTCATAGAGTAACGCCTCATTTGCTTCCTGAGGATAGTGGTGGCAATGAAAAGCCCACTCCCCCACCCTCACCCAGTGTTACATCATCAGTGCTCAGCTACCTCTCCTCTACTAATTCACTCCAAATGCATTCACTAACAACCCACAGAACATACTCCTTCCTCTTCTGTGGCATTTATTCACCTTGATTTGTTTTCCCATTGTAACAATGAAACGAGATGGTTCTTTGTAACTTCATAAAATGGGCTTAACATTTTAAAATGTTCCAGGGTGGCAGTAACTTAATCTCTGCCCCCAAAACCACTTGAATGTCAGAGAAATTTTCAGAAATTACTGGTAAATATTCTCCCAGAGGTCTGGGTCGAAGCAGTTCATCTTACCCCTGCCAATTCAAGAGCAGATTTTTTCAGTCTACCAACCACAGGGTCAAGAAGAAGCAGTCGTTCAAGGTAGAGTTCAGTAGGTGGTGACTTTTGCACTATGACCCAATGATAATCCTTGAATGTGACTAATTGGCATGGCTCTTTATTTCATTCAACTCATAATACTAGCCTTTCTGAGGGGAAAAAAAACCATCATTTTCTTACCTTAATTATAAAGACAAGTCTATTACCACTTGAAGATTAATACACTCTAAGTTAAAGATTCCTCTTTAAATAATTCAAATGCCTCAAACTATTTTAACCAATGTTCTTAAACTTTCTAGCTCCATGAAAGACCTATGTGGTCTCTGTTTGTTTTAATTACCTCACTGTACTTTTTTCTAACAG
Seq C2 exon
GTTTCAAGTCAGAAATACAGCTCCCCAGGAAAGCTTACTGCACAATTGTGTATGGATTCATGGATCAGAGGTCTACAACCAAATCTGCAATACTTCTTCATACAGTATCTGTGAGAAGGAACTGTAAATGTATGTGAGAATATAAAGATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCACACACACCACCACCACCACCACTACCAACAACAGAACAGAACAGAACAGAACAGAACAGATTAATATTAAAAAACAGAAAAAATGCTGGGATGCTAAGAGACTTTAACCTCATTTGAGAACTTGGATGAAGAAGCTGAGACTTTTGTACTTGTCATCTTCACAAAGATGGTGGCACTATCTTCCAGTTAGGAAGTCACTAGACATGGAGTGAGGGCAGCTCAACAATACAGAGAATATGTGAACCTGAGGTACCCTGACTCAAATTTCACAACCACAATGAAACCCCTACACTATCAGGAAACACTGTAGAGGAGTGAGACTGAAGACTTTAAAAGCCAGAGAATCAGCCTACTTACTGTGGTGTTTTCTAGACAGGACAGGGAAAGTATATCTAGGAAATAAAAACAATACAATTCAGCAAACAAAATCTGCATAATGACAACCTCAGTTGGTATGGTATGTTATGGTATGGTATGGGTGTAGAAGTTTCACAAGGCCCTATGAAGAACTACAGACAGTTAAATAGGGGGAAAGCTTTTTCTAGGATCAAGCCTACTGAACCCCAAGAAGTCAGCACTGAACATATGTACAGATCAGTATCATTAAATGAACTAGTAAGACATATACATATATGTTAATCAAATATTGGTACCAGAGTACACACTGTGTTTGCATGATTTTCTCAGTATCTACAGTACACCAGACACAGGGAGAAGGCAAAATGAACTTCTAAATTGAGAAGTGAAAAAAATGAGGGAAGAGAATCTTCACCACAAATAGGGATTCTATTTTCACCCACATGATCATTATTAAGATGGCCATCACCCAAACGTCGTGACCCAAGCTACTTCCTCAACTAGATAACTCAAAGAGTCTGCCCACCTTTTCTGATAGCAAATCTGGTATCTAGATTTCACTGTTTCCTTATGCTGTCTGGCCAGCAGTATGACAAAGGTGCTGCCCTTTCAGGAAGCAGTCTCCTTAAATGCTGTAGTTGGAAAGATAAATCATATCTGATAGTGAATATTTAAAAAGCGCCCAGTCAGGATAAGTGTTTTGGAACACAGAACATATTTCATCTTTTTATGATACACTATCTTGCAATTAACAACCAATTCTTAAGTCATTTCTTTACAAACATATGACTGGAATATGACTGTTTCCTAGTGTGATCTGTCTTGTTAACTTCTAAGATTGTCCATTAATACCACCCTTATTTCCAGTGTGGACTTCCAAATTGCTGGGGATCTGTTTATAGCTTTCTCAGACTAATCAATATGTGGGCAGAAATTGTGCTGAGTCCACTGAATTGTTCTCTTGAAAATGATTGGGTTTATGTCACTTTCATCTCAATTGAAAAACTGCTTATTAAAGTATCTTTGGCCTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079293-Clec7a:NM_020008:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.4=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: