RnoINT0037239 @ rn6
Intron Retention
Gene
ENSRNOG00000054251 | Clec7a
Description
C-type lectin domain containing 7A [Source:RGD Symbol;Acc:1565140]
Coordinates
chr4:163217813-163220813:-
Coord C1 exon
chr4:163220695-163220813
Coord A exon
chr4:163217940-163220694
Coord C2 exon
chr4:163217813-163217939
Length
2755 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
CACTGTATTTCTTTTAACAGGTT
3' ss Score
10
Exon sequences
Seq C1 exon
GAGTTCATTGAAAGCCAAACATCTTCTCACCGTGTTAACTCATTCTGGATAGGTCTATCTCGCAATCAGAGTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTACCCCCAACTC
Seq A exon
GTAAGTTCCTGTAGAGACATGGAGAGGTCGAATTCTTCCATACAGTAAAAAAAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAACAAAAAAAAAACAAACAAAAAAATCCCTTGCTTTTCTGGTCACATAGGAGAAAAAGGAGTCATGGTGGTGGAGGAAGAGGGAGAAAGGGACATAGGGATGAAGAGAAAAGCTCTGAGGGAGACTGTAGAGGATGCTCACCTGGTGCTGACTAAGGGATTCCCATGGCATCTGGTCCATCTGATCCAGTGAGGAGAGGTGTTGCTGTCCACTGCAGCCTTGGACTTCCAGGCCATAAGTCAGTCTGAGGTAAAGATTAACCTACTCAATGGACATGAGACACTAGACAAAATGTCTTTTAGAGCCACACTCTGTATCCAAAACAGAGAATAGAAAGAGTGGTTATCCATTAGAATGGTAAAATAAAGGACATGAAGGTAAAGTCATTAACATAATGTTTTTCACAGAGCCAATGAAAAATGACATCCGATGTCATTATTTCAACTGTTTCTTAACATTTGTGAGGTTACAATTTCTTCCTCATTGTGTACTAAAGTCTTTGAAACTTCTATTCATCTGTTCATTAATATTTGTAAATATGACTTTTATTTCCCTTTCAATGTATATTGATGCATGCAAGTGTGTATCTTTTCTCACGTTAATCTTAATATATATAATATAATCTTAATATATAATATTAAATTTTACCGTTTTAAATTTTACTAATGTTTCTTTTTCTCTTCTATCACTTCTTTGGCTAATGTTGATTATCTTCCATCTAATTTCTCTGTGTCAAATTGAATTCCCTTTTTAAATTCTTATGTTGGATGCTTAACTCATCATCTCCGGTCTTTCTTTTGCTTTGAGGTCATTCGGTTCACATGCTTTCTGATTTCCACAGTGAGTTAGTTGTTCTTTGATCCATGACTTAGAAAGAAATTTCTCAATTTTCACACATACCTATGCTTCCCACATTCCTATTTATCCTTTAGATTTCAGGCTTAGTTCCTCTGTGATCAGTAATGTACTGCTTGTGGTGGCAATTCCCACTTCCAGCTCTGAGATTTGCATTGAAAACATCTACATGAGTGCTCCTATATTTCTAGATATGTTAAAGCCATACTAAAAGGCTTACGTAGATTTAGAATTGTTGCATCTTCGTATTTGATGTCATTTCCCTTTCTTCCTTCATTCTTTTTTTTATACTGGATATTGTTTTATTTGCATTTCAAATGTTATCCCCTTTCCCAGTTTCCTGTCCATAAACCCCCTATCCCATCCTCCCCTTCTTCTATGAGGGTGTTTCCCCCACCCATCCACCTACCCCTTCCCACTTTCCCACCCTGACATTCCCCTACACTGGCGTCCAGCCTTGGCAGGACCAAGGGCTTCTCCTCCCATTCGTGCCCAACAAGGCCATCCTCTGTTACATATGCAGCTGAAGCCATGGGTCTGCCCAGGTGTACTCTTTGGATGGTGGTTTAGTCCCTGGGAGCTTTGGTTGGTTGGGATTGTTGTTTTTATGGGGTTGCAACCCCCTTGAGCTCCTTCAATTCTTTCCCTAACTCCTCCAGTGGGGACCATGTTCTCAGTTCAATAGTTGGCTGCGAGAGTTCGCCTCTGTATTTGTCATACTCTGGCAGAGCCTCTCAAGTCTTCCTTCCTTTGTATTTTACTGATTTTTGTTTATTTCTCATAATTCTTCCAGTTTGCCTGTTTTTTGTTTGTTTGTTTGTTGTTACTTGCAGCTCATTTTGCTTACAGTAGTCTCAATACTATCTATTCATGTCCAGAGTCCATTCGGGATAGTTTGAAAGTCTGTACCTGCTAACTCTGTATGCATTCTGGTTTTCTCCTGTGCATCCTTTGAGTTGGTTTGTTGTCTTATATATAATTGTGTCTTTGAAGGCTTCTTATCAACATTGCATCTTGAACTGTTTAGGGCTTTATGTATCAGCCTGAAGTTTGTAAAGTAGCATCTACTGGTGGCAACGAAAAGTCCACTCCCCCACCTCCACCCAGTGTTACATCAGCAGCGCTCAGCTACCTCTCCTCTACTAACTCAGTACAAATGCGTTCATTAACAATCCACAGAACATACGTCTTCCTCTTCTGCAGCATTTATTTACCTTGATTTGTTTTCCCATTGCACCCATGCAATTAGATGATTCTTTGTAAATTCACAAAATGGGCTTAACATTTTAAAATGTTACTACTCCTTTGTTGCAGGGTGGTGGTAACTTAATTTCTGTCTCCAAACCACTTGAATGTCAGGGAAAATTTTTGGAAATTACTGGTGAAAATTCTCCCTGAGGTCTGGGTCAAGGCAGTTTATCCTGCCCCTGTCATTTCAAGAGCAGATTTTCTCAATCTACCAACCACTGGGTCAAGGAGAGGCAACCATTCAAGGTAGAGTTCTGTAGGTGGTGACTTTTGCTCTATGGCCCAATGATATTCCTTGAGTGTAACTAATTGACATAGCTCTTTATTTCATGCAACTATTAATACTAGCATTTCTTGGGAGGAAAGTCATTTTCTTACCTTAATTATAAAGACAAATCTATTACCACTTGAAAATTCATAAAATCTAAATTAAAGATTTCCTTTTTAAAATAATTTAGATTCCTCAAAACTATTTTTACCAATGTTCTTAAACTTTCTAACCCCATAAAAGACCTCTCTGGCCTCTGATTGTTTTAATTGCCTCACTGTATTTCTTTTAACAG
Seq C2 exon
GTTTCAAGTCAGAAATACAGCTCCCCAAGAAAGCTTACCCCACAATTGTGTTTGGATCCATGGGTCAGAGGTCTACAACCAAATGTGCATTGCTTCCTCATTCACTATCTGTGAGAAGGAACTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054251:ENSRNOT00000077793:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.4=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]