BtaINT0039341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33580759-33584360:-
Coord C1 exon
chr25:33583425-33584360
Coord A exon
chr25:33580817-33583424
Coord C2 exon
chr25:33580759-33580816
Length
2608 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
TTACAGGGCTCTCCTTTCAGATG
3' ss Score
8.85
Exon sequences
Seq C1 exon
CTGACCACGGTGGCCGAGAAGTCGCGGGTGCTGCAGCTGGAGGAGGAACTCAGCCTGCGCCGTGAGGAGATCGAGGAGCTGCAGCAGTGCCTGCTCCACTCGGGCCCACCACCGGCTGACCACCCTGAGGCCGCCGAGACCCTGCGGCTGCGTGAGCGACTGCTGTCGGCCAGCAAGGAGCGCCAGCGGGAGAGCGGCCTGCTGAGGGACAAGTACGAGAAGGCGCTGAGGGCCTACCAGGCGGAGGTGGACAAGCTGCGGGCGGCCAACGAAAAGTACGCGCAGGAGGTGGTGGACCTGAAGGCCAAGGTCCAGCAGGCCACCAGCGAGAACATGGGCCTCATGGACAACTGGAAGTCCAAGCTGGACTCGCTGGCCTCGGACCACCAGAAGTCCCTGGAGGATCTCAAGGCCACCCTGAACTCGGGCCCCGGCGCCCAGCAGAAGGAGATTGGGGAGCTGAAGGCTGTGATGGAGGGCATCAAGATGGAGCACCAGCTGGAGCTGGGCAACCTGAGGGCCAAGCATGACATCGAGACAGCCGTGCACGTGAAGGAGAAGGAGGGCCTGCGGCAGAAGCTGCAGGAGGCCCAGGAGGAGCTGGCTGCCGTGCAGCAGCACTGGTGTGCCCAGCTGGAGGTGCAGGCCAGCCAGCACCGGCTGGAGCTGCAGGAGGCCCAGGACCAATGCCGCGACGCCGAGCTGCGCGTGCGCGAGCTGGAGAAGCTGGACGTGGAGTACCAGGGCCAGGCGCAGGCCATCGAGTTCCTCAAGGAGCAGATCTCCCTGGCCGAGAAGAAGATGCTGGACTATGAGCTGCTGCAGCGCTCCGAAGCCCAGAGCAAGCAGGAGGCCGAGAGGCTGCAGGAGAAGCTTCTGGTCACCGAAAACAGACTCCAGGCCGTCGAGTCCCTGTGTTCGGCCCAGCACACCCAT
Seq A exon
GTAGGTGGCCGCTGCCCCTCCTGCCCACAGGGCGGCAAGTGGCCCCGGGCTCAAGGGCCCTGCTGGGGGAGGGTTCCGGCGTCTGTTGACCTTTTGTTTGCAGCCCAGGGAAGCGTCCCCGTTGCCCGCCCCACCTGGAGCATACCAGTCTGAGATCACAGGGCACCTGGCTCAGAGGAGGAGCCCCTGGCCCCTCTCTCAGAAGGGCAGCAGGCCTGAGTGACCGTTCAGAAGGGCAGCAGGCCTGAGTGACCGTGGGGCCCCCAAGCAGTCTGAGCAGACCTGGCTGGGTCCCCACAGGCCAGCCTGGAGAGGAGTGTCCCTGGGCAGCAGCCTTCTCCCCAGCTGGCAGGCACGTCCCACCATGCAGGCTCCCAGGCCTCCTCAGGGCGTTGGTACCAGGAGCTCCAGCACTGGGCTGGCAGAGATGTGGAAGGCAAACCCTGCCCACCCCTGGGCAGGGGTAAGAGAGTCCCATTTCCAACCCGAGCGCTGACCTCGGGCACCTGAGGGTGGCCCCCTATTTGCCAGTCCCAACGAGACGGAACAACAGTCTGGCAGCCACTTTCCTAAGTGGAGCGGTGGGGTAGGGGAGTGGTCCCAGGAGTGGGCTCTGCAAGGCCAGAAGGCTGTGACTCTGGGGAGACTGCTGCCCCCTGTATCAGCTTTGCTACAAATCTAGACGTCCCAGCTGAGCACACTGGGGAGGCTGGGACCCCAGGTATCAAGAACAGGTGCTCCCATGGGCCAGGAAGGGCCTCGTGAGTGGATCTGGGCACCACACCTGGTGCAGGCCCTAGAATGCCCCATCTCACCTGGACTCCCTTGGGGTCCATATTGGCTCCATTTCATAGATGAGCAAACCCAGATTCCAAGGCGGAATAGCTTTCCCGGAGTTTCTCGCCCATCAGTGGCAGAGTTCCTGTTGAACCCCACTGCCTAAGGGCCAGAGAAGTACCCGGAATGACAAAGTCTTATATGAAGGGACAATTCGCAGCAAAATTGTTGCCTCCCCCCCACTCTCTGCCCCCCAACTCGAGGCTTGTAGGATCTTAGATACCCAACCAGAGATTGAACCCTGGGCCCCTGCAGTAGAAGCTTGGAGTCCCAACCACTGGACCACCAGGGAAATCCCAAGATGGTTGCCTTTTTATCAGCCCCAGTGGTTCTTGAGCTTCTGGTTCCCCTTGTACATTTAATCCAGAATTCAGTGTTTGAGCAACCAGTGTTCAGAAGTTCTCCGTACAGGGGGTGCCTTTTTTGTAAAAGGAGCCCTGCCTGTGTCATGCCTTAAGGCCCCACTGCACCGGCCATCTGCCCCCTTCTCCCAGGCGGGGGCCCCTATTAGCAAATACCCTCCCAGGATGCTGGGCAGAGGGGAGAAGAAGAGCCCCAGGTTGCACACGGCCTGGTTGGCTGCTCAGGGCAGGAGGGTCAGGCCTGGGGCCCCAGGACCTGGACTCCCTTAGCAGGGAGGTTGGGGGTTGCTGTGGTTCCACAGGATGGCCTGCTGCCCCTCTGTCACAGACCGCACCCCAGGGAGTGGGTGGTGACCTTAGAAATGCCCACTGATTTCCACACATGTGGGACCTTGGTCTGGACCCACATGCCCTCCAGATTTAAAGGTTCAAGGACAACTTGATTTTTGTTCTCATGTGTAAGAATGGGAATTATTAAAAAAAAAGTTTAATGTGTGCCCCGTTTTCCCTGCAATGTGTATAAATAAAGACCTAGGGGGCTTTGTTAATCACAACAGACTGGCTGAAGCAGGGCTGGGGATGTCTGAGCGGAGGTATGAGGGACAGGGCGGATGGAGGTGACTGCCTGCTCAACTCCGCGCTGCCCTGATATGCAGTGCTAGGGTCTGGCAAACTACAGGGGATGGCCAGCTTTGCTTGTGCAGGAAGCCAGAAATTTCTGCTAAGAAGCAGCGAGGAGCCTGTTGATGTTTGCCACACAGATTTTTTTTTTCTTAGTTGATTTTTTGCTTCTTTGCTTCCGGGTTTGTTTTTTAAAGGCAGTGTTAGATCCCCTGGAGGAGGGCATGGCAGCCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGAGGGAGGAGCCTGGCGGGCTACAGTCCATAGGGTCGCGCAGAGTCAGACACGACTGAAATGACTTAGCACGCATGCACGCACGCAGAGAAAGAAAGTATCGTTTCTTGAAGTCCCTCTGGGAGCTGTCTAGGCGTGCTCTGCATGCGCTGCCCCGTGGCAGTCGATTCTTGTTTTATGGATGGGAAACCGAGGCTGGGAGTCTTGCCTCTGGATAATGGTGGAAACAGTCCCAGGACCAATCTCTGTAGGCATCCCCAGGAAGGAGACATCTGTTTAATATGATAGACATTTGCAAACAGGAAGGGACAGGGAGTGATCACATGGACGCTGTGCAGGCAGCCCTGGGGGGCCCTAGGAGCAGAGCGGGGGTCCTCTTGTCAGGGAAGCCAGACCTAGAACACCTGTGCCCCCTGCTACAGCAAGTCCATGAAAGTCTCCTTGAACTGGGGAGACGTGGGCTGGCTGGGGCTGGGGACTGAGACAGGGAGGCGAGCATCTCCCTTACAGGGCTCTCCTTTCAG
Seq C2 exon
ATGATTGAGTCCAACGACATTTCAGGGGAGAAGATCAGGATGAAGGAGACTGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875:ENSBTAT00000015759:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]