RnoINT0037335 @ rn6
Intron Retention
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25222709-25226383:+
Coord C1 exon
chr12:25222709-25223644
Coord A exon
chr12:25223645-25226325
Coord C2 exon
chr12:25226326-25226383
Length
2681 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGC
5' ss Score
2.82
3' ss Seq
TTACAGGACTGTCCTTTCAGGTG
3' ss Score
7.04
Exon sequences
Seq C1 exon
CTGACCACAGTGGCTGAGAAGTCTCGGGTGCTGCAGTTAGAAGAAGAGCTGAGCCTGCGGCGTGGTGAGATCGAAGAGCTACAACACTGCCTCCTCCAGTCAGGTCCACCACCTGCGGACCACCCAGAGGCCGCTGAGACCCTGCGGCTGCGAGAGCGGCTGCTGTCGGCTAGCAAGGAGCACCAGCGGGACAGCACCCTGCTCCAGGACAAGTATGAGCACATGCTAAAGACGTACCAGACAGAAGTGGACAAGCTTCGGGCAGCCAACGAGAAGTACGCTCAGGAAGTGGCAGACCTCAAGGCCAAGGTCCAGCAGGCCACCACCGAGAACATGGGGCTCATGGACAACTGGAAATCCAAGCTGGACTCTCTGGCCTCCGATCACCAGAAATCTTTAGAAGACCTGAAGGCCACGCTGAACTCTGGCCCAGGCGCCCAGCAGAAGGAGATTGGCGAGCTGAAGGCCCTGGTGGAGGGCATCAAAATGGAGCACCAACTGGAGTTAGGGAACCTGCAGGCCAAGCATGACTTAGAGACGGCCATGCATGGGAAGGAGAAAGAGGGCCTGCGGCAGAAGCTGCAAGAGGCCCAGGAGGAGCTGGCCGGGCTGCAGCAGCACTGGAGGGCACAGCTGGAGGAGCAGGCCAGCCAGCACCGGCTGGAGCTACAAGAAGCCCAGGACCAATGTCGTGACGCCCAGCTACGTGTGCAGGAGCTGGAGGGACTGGATGTGGAATACCGCGGCCAGGCTCAGGCCATCGAGTTCCTCAAAGAACAGATCTCGCTGGCTGAAAAGAAGATGCTGGATTACGAGATGTTGCAGAGGGCGGAAGCCCAGAGCAGGCAGGAGGCCGAGCGGCTGCGGGAAAAGCTTCTGGTGGCTGAGAATAGACTGCAGGCTGTCGAGTCCCTGTGCTCAGCCCAGCACAGCCAT
Seq A exon
GTAGGCTGCATTCGCTTCTGTGGGGCCCAGCTGGGGAGGGACAGGGAGGGCGTGGCCTCTGCATGCCAGCTGGGGGAGCTTTTTCCTTGTGCCTGGAGCTGACCAAGGGAGCCCCAGAGGAGGAGCTTCCGTCTCCCTCCATCAGAGCCATGAGGATTCTTGGGACCACTGTAGTCTAAGAGGACCCTGCTTGACCCTTCATACACAGGCTTTGAGAGCCATCGAAGGCACCATTTTGCTAGCCCCTGAACGCTGACTGGCTTAGACTGGAAGGCTGAGACTTGGCAAATGGCAAGTTCGAGGCCAACCTCAGTAGCTTAGTGAGATTCTATTTCAAAGTTAATTTTTTTAAATGAGCTGAGTGTGTGGCTCAGTGCCAGAGCACTAGAATGCCCCCCTAGCAGAGGTCCTCAGTTCCATCCCCAGCGTGACAAAACAGTACACACAGTCTATTGAACAGGTTGCTCCCATTTCCTCTCTGGTACCCAGTACTCAGGTAGCACCCACAAAAAGGACCTGCTCCTCCCAGGTCCTTGTCTCAGACACCTCCCCGGGGACTCAAAGATGTCTCTCTATCTTCCAGAAAGGTCCCAGCCACCATGACCCACTTTGTCCCAAGTCTAGAAGTACCCAGCTATATCGTCCTTGCTCCAGATGAGCATGTCCCATTAGTCCTTGAGGGGGTGTCAAGGAGTATAGAGAGCCCTGTCCATTCTAGCAAGTCCAGCAAGGATGCTTCACCGGCTCCGAGCTCCACATTTCTGAGTCCTGCATTGGTCCATTTCAAGATGTATTGTGTTTAGCCATACACCGTGAGCACCAATGCCCATGGTGGCCAGAGGCTTCGGAAACCATGGAGCCGGCGTTCCGAGTGCCTGTGCGCCACCTGGCTTGTGTGCTGGGAATTACACCCAGGTAATCTGCGAGTGCAGTGCCCACTCTTAACTGCCAGGCTGCGTCTCCAGCCCCCAATAACTCATTTAAAATAGCCTTACAAAGGGTCAGCTAGGACTGTGATAATTAGTCCATGCACGATATCGCTCTGCAGTGTGGTATTCAGGGAATCAATTGTCTGTAGGTCCAAGTCTTGTAAGAAAGGACCTCTTCCTGCCTTGTGCTATAGCATTCTATAGTTGCCTTCCTCTCAGGAGGAAACTCTTTTTTTTCTTTTCTTATTTGTTTGTCTGAGATAGGGTCTTGCATAGCCCAGGCTAGCCTCAAATTCACTCTGTAGCTGAGGATAACCTTAATTTTTTTAAAAGATTTATATATTTATTTTATGTATGTGAGTACACTGTCACTGTCTTCAGACATAACAGAAGAGGGCATCGGATCCCCGTTACAGATGGTTGTGAGCTACCAAGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCCCCAGCCCCCTAACCCTAAATTCTTGATCCTCTTGTCTTTAACTCTCAGGTGCTAAGATTACAGATTTGTATCACCATATTCCACCTTGCTGATATATGTGTTTGTGTGTGTACATGCTCACATGTGTGCACATGCATGTGTATATGGGGTGCATATGTGTGGAGGTCAGAGGTCAACCTTGGGTACAGTCTATTTGTTTTTGACATGGGGTATCTGAAGTAGGTAGGTTGGCTGGTTGGCCACCCATCACCAAGGATCAGCCAGTATCTGCTTCCCGGTGCTTGGATTACAAGTGTGCACCACTGTGTCCAGCTTTTTAGGTGGGTTCTGGGGCCCAGACTCAAGCAGTAGCAAGGCAAGCCTTTTACCAATTGAGCCGTCTCACCAGCTCCTCCTTTTTTCTTTTTCAATCAACTTCTTCTTCCTTGGCTTCTGAGTTTACTATTAAATAAGCATTGTGAAGAAGGCAGTTAAGGAAGCCCCTAGATGGGCCATCCACGCTCTGTTGTATATATTGAGAGCTTGTTTTATGATTGGAGCGTCAAGGCTGGTGTCCTGCAAAAGATTGCCAAGGCAGATCTCAGAAAAAGAAAAAAAAAAAAAGACACCTCTATTTAATATCTTCTTAACCAAGGGTATAGCCAAGTCAGACCTGGTGACTCAGTACCATAAATTCTAGCTACCAGGAGCTGCAGCAGGAAAATCGCAATCTCCAGGCCTCCTTGAGCTGCAGAATAAGTTGATAACCCATTCTAATAAGTCAATAGGGAATGAGCTACAGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCCGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCACCTGCCTAGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCACCATGAGGGGCTGGGGGCGTGGCTCGGTGATAGAGCTGGTGCCTAATATGGAAAACGTCCTAAGTTTCATCCTCTGCTCCTTACTTTCCAAATAGCAGTTCAGGGGCAGCAGGAAGCCTGCTGGGTGCTTCCCTTTTTTCACGGAGAGGGATTCAAGTATGTCTGCTCCCCCTGCTGGCACACTGGGTCCCTGCATCCTCCCAAGGTTCCTTTTCACAGGTTGAGGTGTGGCCTGGTGGCAGGCATGTCCTCTTACAGGACTGTCCTTTCAG
Seq C2 exon
GTGATCGAGTCCAATGACCTTTCTGAGGAGAAGATTCGGATGAAGGAGACTGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611:ENSRNOT00000033200:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123293=TMF_DNA_bd=PU(19.2=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]