GgaINT0131609 @ galGal3
Intron Retention
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2746393-2750325:-
Coord C1 exon
chr19:2749381-2750325
Coord A exon
chr19:2746451-2749380
Coord C2 exon
chr19:2746393-2746450
Length
2930 bp
Sequences
Splice sites
5' ss Seq
AATGTATGA
5' ss Score
2.55
3' ss Seq
GTATTCTACGTTTATTGCAGATG
3' ss Score
8.82
Exon sequences
Seq C1 exon
CTGACCACGGTGGCAGAGCAGTCCCGGATCCTGCAGCTGGAGGAGGAGCTGAGCCTGCGGCGCAGTGAGGTGGATGAGCTGCGGCAGTGCTTGCGGAGCTCACACCAGGCAGAGACCCCCGAGCACAGCCTTGGCTTGCAGTCTGAGGCACTTCGTCTGCGGGATCAGCTGCTGTCTGCCAACAAGGAGCACCAGAAGGAGAGCAGCCAGCTGAAGGAGAAGTATGAGAAGACGTTAAAGAAGTACCAGCAGGAGATGGAGAAGCTGAAAGCCGTCAATGAGAAGTATTCGCAAGAAATCGTTGACTTAAAGCATAAGGTTCAGCAGGCCACCAATGAGAACATGGGGCTGATGGACAACTGGAAGTCCAAGCTGGACACGTTAGCTTCTGACCACCAGAAGTCTCTGGAGGACCTCAAAGCCACGTTGAACACGGGCCCTGACACCCAGCACAAGGAGATCGTGGAGCTGAAGGCGGTGGTGGAGAGCATCAAGATGGAACACCAGCTGGAGCTGGAGAACCTGAAGGCAAAGCATGACATCGAGACGGCTGTTCACATAAAGGAGAAAGAGAGCCTCAAGCTGAAGCTGCAGGAGGCTGTGGATGAAGTGGAAAAAAGCAACAGCAACTGGAAAATGCAACTGGAAACCAAAAGCAATCAGCACCTTCTTGAGCTCCAGGATGTGAAGGACAAGTGTCGGGATGCTGAGCTGAGGGTGCATGAACTGGAGAAACTTCACAGCGAATACAAAGACCAGACACAAGCAATAGCTTTCTTGAAAGAGCAGATTTCTTTAGCTGAGAAGAAGATGTTGGACTATGAAACGCTACAGAAAACAGAAGCCCAGAGCAAACAGGAGATCCACAGATTGCAGGAAAAAGTGCTTGTCTTAGAGAACAAGCTGCAGTCCATGGAAGCCTTACATCCTTCTCAGCATGCAAAT
Seq A exon
GTATGACTTCTGGGTCACTTTGCTTAGTTGTTATCACTGCTAATAACTCTTCCTAGGAGTAGCACTCAGCTGCTGTCTTGTGCAGCTCGCTGAGGCTTCTGTGGTTTTACTTTCTGTTGATGATGCTTTTTCTGTGCTGCAACTCCATCCTGGGGACTTTCCATCCTCGAAAGCCATTACAGTGGTATAGAAAGTAAGAGTCAAAAGCAGGTGGACCACGTTTGGGTTCAGAGCTATGTTAGTGTTGTGATAGCACAGCAGGGCCGTCGTGGTTTGGCAGGGAGGGGTGCTCATTGTGAGAAAGCAGCGCCCTTAGCTGAAAAAACAGCATTTCTGCTGTGCACCTGCTGTTCTCTGAGGAGGCTGCAACAGGCTTCAGGAGCAAGGTCCTTAATGGGAAGCTGGAGGATAGGGTGAAAGAAGCATTGCATGTGCTAAGGGAGAGCGTGGAGTGTTGTTTGAGAGCCTCAGGAGGGTTGAGCTGGTGTGTTGGGTGGAAAGCCAGCAGTGTGGCCTCATGCCATATTTGGGAGGTGTTAGGAAATGCTGTCACTTATTGGGATTGTAGTGGGAGAGCTGCTAGCAGGGGTCAGAATGGCTTCAGGCCAGGATAATAAAATGCCTGATTGAATGAGAGTCCTGAGCCTCTCTGGGAAGGCTAGGATAAAAGCAGTGGTATTGTGAAGGATGTGACTCTCTTACACTGGAGTAAAGCAGGGAGGTTGCCACCCATGGCCCTAGAGCAGGACCTCTGTTCGTGTTTGGCTTTGGCATGAGAAATGAGCCAGCAACCAACTTGACCTTGTCCACGTGGGGATGAGGAAAAGGAAAATAAGCCATGAAATGGGCACGTTTTGAGAACACTCATTTGAAATCTATTACCAGGAGATGTAGTTTGTTCCAGACTGAGGTGCCAGTGAAGTGGATGTAATGACTGTTCACGCTGGCAAATTAAACACAACCCCACTGAAATCATTTGTACCACTAGGCAACAAAGCGGAGCCAATGAGTTAGCACTGGCCAAGTCAGAGCTTCATGCCTGCAGACAGACATCCTCCACTGGAGAGGAGGAAAAAAGCCTGAGGAGGGATCTGCAGCATTAATGGTGCTTCAAGGGTTGCTCAACATGTTTCCTCTAGTAAAGATGGTCATGAACAATAAGTACAGCTGTGGCCCTGGGAAAAGCGAGTTGTTATTACAGTGCATCACATATTATAGCCAAGATTTAAACAAGAATGAATGTAAAAGAAACTTGAGGCTTGTTCCAGAGCCATTTAAACAAGTGAGAGGGCTCTGGGGAGTTTTATTGGTATTGGATTAGAACCAGGGAGTCTTGAAGTAATTATTTTTAAGTGTGTGTCGATTAAAATCAGGAAAACTTGGGAAGGAATGCATTGATGGAAGCCTTTGAGTGTCATAGAATAAATTCTATCTTAAAACATCTTAGCTAATTTAACGTGACTGTAGTATTAGCTATCCAAATATTTTGAGCAAACAAATGCCTCGTGACTGTGAACGTGCCTTCTTTCCTATGTCTCCCAGTGAGAACAGAGCAGTTAAATAGTTTTCTGTGCCAGAAATACAACAGGCGAGGTGCTTCCCCTTCAGGTGTGCTCCTGCTTCTGTTCAGGCTGGGTCCTGCAGTGTGCATGAGCTGCTGGGGCTGACCCTGGGGCTTTCAGCAGTGGTGGCTGCAGCAATTGCTCAGTCTGAACGTTGTGTCCTAAAGTCCCACCAAAGGCTATAGGATGGGAGGAGGCTTCGAGTGCTGGACTGCAGCCTCTGCAATGGAAAACGTTTTTATTATTTACTTATTTGTTAGTAAGCTGGTAGAAGTCAAGGGCTGGTAGTTGCATGGTCCAAATTGGGCAGGTAGTGAACTTTCATGCTGTAGCTTACTTGAATCTGCCTTGAGATGAAGCCTGAAATCTAGAAGTGGGTGTTAGGCAATTGTGTGCAGCTCAGTGGTGTTTTAGGGGAGATTCTCTTGTGCAGGGAGAGATTACCCTGGATGGGGCAGAGGTGTGAAGTCTCCTGGGATGGGATGGATTTTCCTTTGTTTGGGGGTTGTGCAATGGCCACCCTCTCTCCAGGGTGTTTGGGATTCCCTTGGGGTCTCCCGGCCATTTGCACTGAGTCTGGAGAGATGAACTATAGGATTTTATGAGGAGGAAAAAAAAAAGGAAAAAGTGAGAAGGGATGCAGGTGAGAGGATCCCCAGCTGGATGACAGCCCATGCTTCTGTTGGGTGCCATGCAGCAGGTAAAAGTGCAGCAGTGTCACTTGGTACGCACTGCCCGAGGGCACTCACACAGTGCTAATACTGCTGTGCATGTTGTCCATGTGTAGGCTGGGCACAGTTTGATGCCATTTGTCTGGCTTTCTCATGGGGCTGTCACTTCGGGGCAAGAAGACTGACGGTCTGTGCCCTTCCTGAGGTCTGCACTGTTTTAATTGGCATCATTAATGCTTCAGGCACTTGGTTTCTCTTGGCAATCCTATGGATCTATGCCTGTGCCATTCCCATGCGGGGTACCTGTGGGTAGTGCTGTGTTACTCCAGGTTGTCATCTTAAATAAGTGCATTTGCACCCCATGGAAGTGTTTGCCATTGTCTGAGCCTCACGAGGTTACAGATGAGATGGAGATCCTCGTACATTTTTCTGAACAGGGGCAGTCTTGAAGTGTTGATGAGAGCACATGAACAGTCATCCTAAAGGGTGTGTGTTATGGAGGGCTGCTGGATCAGGAGACCTCCAGTAGTACCCAAGTGGAGAAGCAACTCCTCCAAAGTCTGTTTCCCTTTTGGAAGACTGTAAAGCAGTGCCAGTCCCACTTCTGCTGCTTGGATGGGGCTCTGTGGTTGTTGGTTTTGCTTTGAGTCTTTGGGTTAAGGGCTGTTTTATATCTCGTATTCTACGTTTATTGCAG
Seq C2 exon
ATGATTGAAACTAATGATATTTCAGAAGAGAAGATAAGGATGAAGCAGACCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291:ENSGALT00000001972:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]