HsaINT0036374 @ hg38
Intron Retention
Gene
ENSG00000106665 | CLIP2
Description
CAP-Gly domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr7:74375887-74380863:+
Coord C1 exon
chr7:74375887-74376822
Coord A exon
chr7:74376823-74380805
Coord C2 exon
chr7:74380806-74380863
Length
3983 bp
Sequences
Splice sites
5' ss Seq
CACGTAGGC
5' ss Score
3.85
3' ss Seq
TACAGGGGCTCTTTTTGCAGATG
3' ss Score
7.36
Exon sequences
Seq C1 exon
CTGACCACAGTGGCCGAGAAGTCGCGCGTGCTGCAGCTGGAGGAGGAGCTCACCCTGCGCCGAGGTGAAATCGAGGAGCTCCAGCAGTGCCTGTTGCACTCGGGTCCCCCACCTCCGGACCACCCAGACGCCGCCGAGATCCTGCGGCTACGGGAGCGGCTGCTCTCGGCCAGCAAGGAACACCAGAGGGAGAGTGGGGTGCTGCGGGATAAATACGAGAAGGCCCTGAAGGCCTACCAGGCGGAGGTGGACAAGCTCCGCGCGGCCAACGAGAAGTACGCACAGGAGGTGGCGGGCCTGAAGGACAAGGTTCAGCAGGCCACCAGCGAGAACATGGGGCTAATGGACAACTGGAAATCCAAGCTGGACTCGCTGGCCTCGGACCACCAGAAGTCCCTGGAGGACCTCAAAGCCACCCTGAACTCGGGCCCAGGCGCCCAGCAGAAGGAGATCGGCGAGCTGAAGGCAGTGATGGAGGGCATCAAGATGGAGCACCAGCTGGAGCTGGGTAACTTGCAGGCCAAGCATGACCTGGAGACCGCCATGCACGTGAAGGAGAAGGAGGCCCTGCGAGAGAAGCTGCAGGAGGCCCAGGAGGAGCTGGCTGGGCTGCAGCGGCACTGGCGGGCCCAGCTGGAGGTGCAAGCCAGCCAGCACCGGCTGGAGCTGCAGGAGGCCCAGGACCAGCGCCGGGATGCCGAGCTGCGTGTGCACGAGCTGGAAAAACTGGACGTGGAGTACCGGGGCCAGGCGCAGGCTATCGAGTTCCTCAAGGAGCAGATCTCGCTGGCCGAGAAGAAGATGTTGGACTACGAGCGGCTGCAGCGGGCAGAAGCCCAGGGCAAACAGGAGGTCGAGAGTTTGCGGGAGAAGCTCCTGGTGGCTGAGAACAGACTCCAGGCGGTCGAGGCCCTGTGCTCCTCCCAGCACACCCAC
Seq A exon
GTAGGCGCCTGCCCCTCCTGCTGGGGCGGGAGGGTCGGGCTGGGGAGGGCTTGGCCTTTTGCTGACCTCTGTTCTGCAGCCCAGGAAGCATTTCCCTTGTCCCCGAGAGCATGCCTGGGGCAGTCAAGGAAGGGGTCACCTGGCTTAGAGGAGGAGGAGCTCCTTGGCCCTCTGTTAGAGGGGCAGTGCGCCCTGGTGACCAGGGAGAACCGAAGCTGGTCTGAGCTGACCTGGCTGCATCCCCCCGCACAGAGCAGACCTGGAGAGATGGGACCTCCGTGCAGAGGACGGGCTTTGATTTACCCATACATGTCTTAGGGTGCAGGGCTCCTAGGACCCGGGACCTCAGACCCTGTGCCCTGGGGCTGGCACAGACCTGAAGGCAAGCTCTGCCTATCCCCCTGGGGGCACCCATCTCCAACTTAGAAGCTCACCTGGGGAATCAGCGGCAGCCCCCTTTCTGCCAGTCCTAATGAGACTTTAGCAACGGTGCCAACGAGTACTTCCCCAGAATGTGGGAGTTCCCGGAGTGGGGTCTGGAAGGCTAGAGGGGGTGGCCCTAAAGAGGTCGCTGTCACCAATGTCAATTTTGCTCCAAATCTAGAAATTCCTTAAGCATCTACCCCTTCTTCCTTCAGCTGAACCCATCCTCCCAGCCCCTCTGAGGAGGTCAACACCCAGGTGGGCTGTGCCCACTCCACCAGGGCCAGGAAGGGCCTTTTGAGTGGCTCTGGGTACCACGTCTTATGCCAGGCCCTATGTGACTCCATTTCACCTTAACATCCTTAGATTGATACTGGCTCCATTTCACAGGTGAGCAAACCAAGACTTTCCCAGGTCCACAGCCTCTCAGTGGCAGAGATGTTCAACCCCATTCCCTGTGGGGCTGACAGAGAGTGCCCAAGACAACAGGAATTAATTCATAGGAGGGATGGCTAGCAACGGACTCTTGCCTGTATACAAATTGTACTCAGAGATTCTTGAGTTTCCAGTTCCCCCACATACATTTTTTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGGGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGTATCAGCCTCCCAAGTAGCTGCAATTACAGGCATGCACCACCACGCCCAGCTAATTCTTATATTTTTAGTAGAGGTGGGGTTTCGCCAGGTAGTCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGGCACCATCCCTGGCCTTTTTTTTGGTTTTGTTTTTGAGACAGGGTCTTGTTCTGTCTCCCAGGCTGGAGTGCAGTGGCATGATCATGGCTCACTACAGTCTCAACCTCCCAGGCTTGAGCGAGCCTCCCACTTCAGCCTTCCAAGTCGCCAGGACCACAGGTGTGCCCCACCACACCTGGCTAATTTTTATAGTTTTTGTAGAGATGGGGTTTCCTCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCTGTCTGCCCGCCTTTGCCTCCCAAAGTGCTGGGATTACAGGGAGTAGGTACTGCACCTGACCACCCTCATGTATATTCAAACCAGAATTTAGGGGTGGGTGTGGTGGCTCACACCTATAATTCCAGCATTTCGAGAGGCTGAGGCAGGAGGATTGCTTCAGGCCAGGAGTTTGAGACCAGCCTGGACAACATAGTTAGACCCCATCTCTACAAAAATAAAAAATTAGCCGAGTACAGTGGTAGTGTACCTGTAGTCCCCAGCTACGCTGGAGGCTGAGGCAAGAGGATCACTTGAGCCCAGGTGTTTGAGGCTGCAGTGAGCTATGATTGCACCACTGCACTCCAGCCTGAGTGACAGTGTGAGGCTGTGACTCAAGAAAATACACAAACCAAAAAAACCCGAGAATTTAGCATGTGGGCAGTAAGTTCTCAGGACTAATGAATCCAGGGGGCTTTTTTTGTCTAAAAGGAAATCTTTTTGCATCATGCCTTGAGGTCCCTTGTAATGGCCTTCCTGCCCCTTCTCCCAGGAAGGGATTTTGTTTTTTAGCAAGTGCTCTTCCAGGATCCTGGGCTGAAAGAAAAGGAAGAAACCCAAATTAGCTTACGTGCACATGGCCTGATTAGCTGTTCAGGGCAGGCAGAAACAGCCTGCAACTCAGGAACTGAATTCCCTGAGCGGGGAGGTTTGAGGTTGCTGTGGTTCCACAGAGCATGGGGGACAGAGGCCTGAGGATGCCTCCCCCAGTCCCTGCCCCTCATTCACAGGTGCCCTTGGACCAAGAAGTAGTAGTGGCCCCAGAAAGCCCATCTCCTGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACAAGGATTACTTGAACCCGGGACGTGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCGGCCTGGGCAACAGAGGGAGACTCCGTCTGGAAAAAAAAAAAAAAGCCCATCTCTTGATTTTCTGTATACACTGGGGCTTAGTCTAAACGCATATGTCCCCATGTTCAGAGGTTTAGGCCTAAGCACAACTGGACTTTTGGTCTCAGGTAGTAAATATGGGAATTTTAAAAATTATTTTAGTGGCCAGGTGCTGTGGCTCACACCTGTAATCCCAGCACTTTGGGATGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTCAGAGTCCTGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACGGAGTGAGACTCCATCTCAAAAAATAATAATAAAAAAACCCCAAAATTAGCTGGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACTCGCTCGGGAGGCCGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGAGCCATTGCACTCTAGCCTGGATATCAGGGCGAGACTCCTTCTCAAAAAAAAAGAAAAAGAAAAATTTAGTGTGAGCCTCATTACTGCATCGTATATAAATTATGATCCAAGGGGCTTAGTTCATTACAACTAATTGAGACTCAAATGGGACTTGGGATGTATGAACAGAAGTATGAGGGGCAGGATGATAGAGGTGACTGCCTACTCAGCTCTGTGCTTCCCTGATCTGCAGTGCCAGACTCTGGCTGGCTCGGAGGACAGCCAGCCTGGGCAGGAGACTGGAAACTCCTGCCAAGAGTGGCAGGGAGCCTATTGGTTGTGTTTTGACTTTTGTCATAGTGATGTGTGCCAGGCTGATTTTTTTTTTTAATAGGTCTTTTCTTCTTTGGCCTCTGGGTTTATTATTAAAAAGAAATGTTGGAGAGAAAGAAGCTAGCATTTAATGAAGTCCCTCCAGGAGGTGGCCCCAAGCACGCTGTGCACACACTAACCCAAAGCAGCCAATATTTGTTTGATGGATGGGAAACTGAGGCCAGAAGTCTTGTCTCTGGGAGACAGAGAAACAAATTCCCAGGACAAATTTCTGTAGGCATTGCAGGGAAGGAGCCATCTGTTTAATATAATAAACATTTTCAACAAAGGAAGGGTAGGAGGTATTCATGTATAAGCTGCACAGGCGGCCTTCAGCAGAGCTGGGTGCAGAATGGGGGTCCTCTGTTGTCAGGGAGGTCCGACTGAGGACGTCTGCACTCCCTGCCACCGCAGCAAGTCCCTGAGTCCGTCACTGAGGTCCCCCTTTGTAGGAGTAGGGTGTGCAAACTGCAGGTGTGCTTGCTGGGCTGGCTGGGGCTGGGGCCAAGGGGCAGAGGTGAGCATCCCCCTTACAGGGGCTCTTTTTGCAG
Seq C2 exon
ATGATTGAGTCGAATGACATTTCAGAGGAGACGATCAGGACGAAGGAAACTGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665:ENST00000361545:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.717
Domain overlap (PFAM):
C1:
PF0396210=Mnd1=PD(98.4=39.1),PF093685=Sas10=WD(100=19.6),PF153971=DUF4618=WD(100=33.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development