BtaINT0040471 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112464704-112465733:+
Coord C1 exon
chr8:112464704-112464883
Coord A exon
chr8:112464884-112465616
Coord C2 exon
chr8:112465617-112465733
Length
733 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCGCGCCTCCGTCCCAGCAGGAC
3' ss Score
8.02
Exon sequences
Seq C1 exon
AAGAAACTTGAAGATGCTAAATCTCAGGCGCAGGTTCTGGGTTTAGATAAAGAATTGAAGAAACTAAAGAAGGCTGTGGCCGCCTCTGATAAGATAGCCACGGCTGAGCTCACCATCGCCAAAGACCAGCTCAAGTCCCTTCATGGAACTGTTATGAAAATTAACCAGGAGCGTGCAGAG
Seq A exon
GTGAGTCCCATGCACAGAGCAAGTGCCCACCAAGGCTGCCCTGCCGAGATACCTAGCCACTTGTGTTTTTGAGCTCTCATTAGAGACTCTGGCTCTTGCGTAAAGTTGTCTGCTTCTCTTCAGACCTGATGGGTGCAGTTCCCCATCACAGCCCTGCCATGGGTGTGGTGCTCTAGGCAGTCCCCAAAGAACCATGAATGAAGCGCACCGTCTTCACCTCAGAGTGCAGGGGTCCGCTGAGGGAGGCAGCTGTCAACGCACAGCTAAGCAGAAGTCTTCAGGCCTGCGGTGTCATCCTTCTGAACCTCAGCCCTTTCATCATGTATAGAGGATCGTATATCTCTTCACAGTGTTATTATGAGTCCTGCCCGAGATAAGTCTGTCACAGCCTGTATAGGATGAAAATGCTGATGCGATTAAGACCACAGGTCGAAGGAGGGAGAAGCCTCACCAAGGGAGCCCAGAGTCCCCCCCCAGTCATGGGAGACTGTGGGACAGGGGAGGAAAAGCTGGTCTGTGCTTTTCTGATGTAGCACCCTGCCTACTTGGACCCCACAGAGGGGTTGTGGGGGCTGCCAAGTGATGGGTAGGCGAGGTGGGGCCGGGCGCCTCCTGTGCAGGGGGTAGCCAGGCGTGCGAGCTGATGAGAGCAGAGACTGAGTCTGGGAGGGAGAGAGAAGAAGAGCACAGCCCACAGTGCCGTGCTGCCTTCCCCGCGCCTCCGTCCCAGCAG
Seq C2 exon
GACCTGCAGGAAGCAGAGCGGTTCAGCAGAAAGGCAGCACAGGCCGCAAGGGATCTGACCCGAGCGGAAGCGGAGATCGAACTCCTGCAGAACCTCCTCAGGGAGAGAGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGAAGATGCTAAATCTCAGGC
R:
CTGCTCCTCTCTCTCCCTGAG
Band lengths:
294-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]