MmuINT0034541 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35147232-35148607:+
Coord C1 exon
chr2:35147232-35147411
Coord A exon
chr2:35147412-35148490
Coord C2 exon
chr2:35148491-35148607
Length
1079 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
3' ss Seq
TTCTCACGATCTGTCCATAGGAG
3' ss Score
9.42
Exon sequences
Seq C1 exon
AAGAAGCGTGAAGATGCCAGATCTCAGGAACAGTTTCTTGGTTTAGATGAAGAACTGAAGAGTCTGAAGAAAGCGGTGGCTGCTTCTGATAAATTAGCTGCGGCTGAGCTCACCATTGCCAAAGACCAGCTCAAGTCCCTGCACGGAACTGTTGTGAGAATTAATCAGGAGCGAGCAGAG
Seq A exon
GTCGGTACCCAAGTCAGTCAGGATGTGCTCATCAGCACTGTCTCAGAGTGAAGAAGTGTGCGTTACTGATCCTTGGTGCAAACTGGTCACCTTACAAGCCACTGTGACACTGTTTGCTTTTCTGTTGGGTTTGGTTTGGTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTACTCTGCTAGCCTAGAACTCACAAAGATATGCCTGCCTCTGCCTCCTGAGAGCTGAGATTAAAGGTGTGTACTACCACCGCTGAGTCTGTCTGCTTTTCTTAAGAACCAGTGGTTATATTCCATCACAACTCCCAAGAATCTATTTGGAGCCATCAAATGAATATTAAAGGATAACCGACTCCTTGGAGAAGTTACTGTCATATACATGCTGGGATTCCAGCTTTGAAGGCTTGCCATTCAGTCTCTCTGAACCTCAAATTGTTTTCTCCTCCTCTTCTTCCTCCTCCTTCCTTTTCTCCTTCTTTTTCTACTTTTCTCCTCCTCTTCCTCTTCCTCCTCTTCTTCTTCTTCTGCTGCTGCTGCTTGTTTTCTTTTTTTTTTTTAAGATAGGATTTCTCTGTGTAGCCTTGACTATCCTAGAAATAGCTATGTAGACTAGGCTGGCCTGGAACTGACAGGGATCCACTAGCCTCTGCCTCTCAAGTTCTGGGATTAGGGGTGAGTGCCACCATGCTCATCTTGAGCCTTAAAATGTTTATTTTGTGTATATATATGAAATCCTACTGTACAGGCTGTTAGTGCTCTGTGCAGTAATGGTGTTGATGCTCAGTAGGACACAGATTTTAATGAGCTTGAGATAGTAGATTATAGTAGGAAAAAATGATGAATGAGACCCCAGAAAGACAGCCATGGCAGGCTAGGATAATGAAGAGGGAGTCTTTATTCCTCTTGCAAAAAACCCTCCACCTACCCCAGGGTGGATCAGGCTTTGCACCACGTGTGAAGGCGTAAGCCGGGCTGGTTATAGGATGGGAGCAGGGGATCACTCTGAGAGGAAGGAGGACTGGAGATGAGCATTTGTGACAGCAGTCCCCTTCTCACGATCTGTCCATAG
Seq C2 exon
GAGCTGCAGGAGGCAGAGAGGTTCAGCAGAGAGGCCATGCAAGCAGCCAAGGACCTGAGCAGAGCGGAGGCAGAGATCGAGCTCCTGCAGCACCTTCTCAGGGAGAGAGAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.293
Domain overlap (PFAM):
C1:
PF059116=DUF869=PD(22.0=70.1)
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCGTGAAGATGCCAGA
R:
TGGCCCTCTCTCTCCCTGAG
Band lengths:
296-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types