RnoINT0038559 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14339753-14341029:+
Coord C1 exon
chr3:14339753-14339932
Coord A exon
chr3:14339933-14340912
Coord C2 exon
chr3:14340913-14341029
Length
980 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTCTCACAATCTGTCCATAGGAG
3' ss Score
9.32
Exon sequences
Seq C1 exon
AAGAGGCGGGAAGATGCCAGGTCTCAGGAGCAGTTCCTTGGTTTAGATACAGAGCTGAAAAGTCTGAAGAAGGCTGTGGCTGCTTCTGATAAACTAGCTGCAGCCGAGCTCACCATTGCCAAAGAGCAGCTCAAGTCCCTGCACGGAACTGTCATGAGGATTAATCAGGAGCGAGCAGAG
Seq A exon
GTCAGTGCAGAGGGTTGTCAGGATGTGCTCGGCAGCACTGTCTCACAACAGAGCAGCACACAGTATCGATCCTTGGTGCAAACTTCTGACACTGTCTGCTTTTCTCTTTCCTGTTTGTTTGCTTTGTTTTCTTTTGTTTTTCAAGACAGCGCTTCTCTGTGTAGCCCTGGCTGTCCTGATACTCACTCTGTAGACCAGGCTAGCCTAGAACTCACAAAGATTTGCCTGCCTCTGCCTTCTGAAGGCTGGGATTAAAGGGGCATACCACCTTTGCCAATTCTGTCTGCTTTTCTTAGGACCCGGTGGTTATATTCCATCACAACCTCCAAGAATTTATTTGGAGCATCAAATGAGTATTAAAGGATGGCAGTTTCCTTGGAGAGGTTACTGCCAAATACATGCTTGGATTCCAGATTAGAAGGCTCTCCATTCAGTCTCTGAGCCTCAAATCCTGTTTTCCTCTCCTCCTCCTTTTCCTCTTCTGCTGCTTCTGTTTGCTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATAGGGTCTCTCTGTGTAGCTCTGGCTATCCTGGAACTAGCTATGTAGACCAGGCTGGCCTGCAACTGACAGGGATCCACTAGCCTCTGCCTCTCAAGTTCTGGGACTAAGGGTCTGCATCACCTTGCTCATCTTGAGTCTTAAGATGTTTCTTTTGTACATGTATTTGAAAACTTACCTTACAAGCTGTTAGTGCTCTGGTGTAGTAATGGCAGTGATGCTCAACAGGACACAGATTTTAATGATCTTGAGATAATAGATTATAGGAGGAAGAAACAATGACTGAGAACCCAGAAAGACAGCCTTAGGGTGGGTCAGGCTTCACACCACATGTGCAGGAATAAGCCAGGCTCGTTATAGGATGGGAGCAGGGGATCACTGAGAGGAAGAGGGACTGGAGATGAGCGTTTGTGACAGCAGTGTCCTTCTCACAATCTGTCCATAG
Seq C2 exon
GAGCTGCAGGAGGCAGAGCGGTCCAGCAGAGAGGCCATGCAAGCAGCCAAGGACCTGAGCAGAGCCGAGGCAGAGATCGAGCTCCTACAGCACCTTCTCAGGGAGAGAGAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGCCAGGTCTCAGGA
R:
TGGCCCTCTCTCTCCCTGAG
Band lengths:
288-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]