MmuINT0034541 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35002755-35004127:+
Coord C1 exon
chr2:35002755-35002931
Coord A exon
chr2:35002932-35004010
Coord C2 exon
chr2:35004011-35004127
Length
1079 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
3' ss Seq
TTCTCACGATCTGTCCATAGGAG
3' ss Score
9.42
Exon sequences
Seq C1 exon
AAGCGTGAAGATGCCAGATCTCAGGAACAGTTTCTTGGTTTAGATGAAGAACTGAAGAGTCTGAAGAAAGCGGTGGCTGCTTCTGATAAATTAGCTGCGGCTGAGCTCACCATTGCCAAAGACCAGCTCAAGTCCCTGCACGGAACTGTTGTGAGAATTAATCAGGAGCGAGCAGAG
Seq A exon
GTCGGTACCCAAGTCAGTCAGGATGTGCTCATCAGCACTGTCTCAGAGTGAAGAAGTGTGCGTTACTGATCCTTGGTGCAAACTGGTCACCTTACAAGCCACTGTGACACTGTTTGCTTTTCTGTTGGGTTTGGTTTGGTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTACTCTGCTAGCCTAGAACTCACAAAGATATGCCTGCCTCTGCCTCCTGAGAGCTGAGATTAAAGGTGTGTACTACCACCGCTGAGTCTGTCTGCTTTTCTTAAGAACCAGTGGTTATATTCCATCACAACTCCCAAGAATCTATTTGGAGCCATCAAATGAATATTAAAGGATAACCGACTCCTTGGAGAAGTTACTGTCATATACATGCTGGGATTCCAGCTTTGAAGGCTTGCCATTCAGTCTCTCTGAACCTCAAATTGTTTTCTCCTCCTCTTCTTCCTCCTCCTTCCTTTTCTCCTTCTTTTTCTACTTTTCTCCTCCTCTTCCTCTTCCTCCTCTTCTTCTTCTTCTGCTGCTGCTGCTTGTTTTCTTTTTTTTTTTTAAGATAGGATTTCTCTGTGTAGCCTTGACTATCCTAGAAATAGCTATGTAGACTAGGCTGGCCTGGAACTGACAGGGATCCACTAGCCTCTGCCTCTCAAGTTCTGGGATTAGGGGTGAGTGCCACCATGCTCATCTTGAGCCTTAAAATGTTTATTTTGTGTATATATATGAAATCCTACTGTACAGGCTGTTAGTGCTCTGTGCAGTAATGGTGTTGATGCTCAGTAGGACACAGATTTTAATGAGCTTGAGATAGTAGATTATAGTAGGAAAAAATGATGAATGAGACCCCAGAAAGACAGCCATGGCAGGCTAGGATAATGAAGAGGGAGTCTTTATTCCTCTTGCAAAAAACCCTCCACCTACCCCAGGGTGGATCAGGCTTTGCACCACGTGTGAAGGCGTAAGCCGGGCTGGTTATAGGATGGGAGCAGGGGATCACTCTGAGAGGAAGGAGGACTGGAGATGAGCATTTGTGACAGCAGTCCCCTTCTCACGATCTGTCCATAG
Seq C2 exon
GAGCTGCAGGAGGCAGAGAGGTTCAGCAGAGAGGCCATGCAAGCAGCCAAGGACCTGAGCAGAGCGGAGGCAGAGATCGAGCTCCTGCAGCACCTTCTCAGGGAGAGAGAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGTGAAGATGCCAGATCT
R:
CTGGCCCTCTCTCTCCCTGA
Band lengths:
294-1373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: