BtaINT0040494 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112492415-112492916:+
Coord C1 exon
chr8:112492415-112492687
Coord A exon
chr8:112492688-112492853
Coord C2 exon
chr8:112492854-112492916
Length
166 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CTCCCTTTTCCTCTGAAAAGGAT
3' ss Score
8.55
Exon sequences
Seq C1 exon
ATGGTAAACCAGAAAGACCTGGAAAGAAGACAAGTAGAAATCAGTGAAGCGATGAGGACACTTAAGTCTGAAGTGAAAGACGAGATCAGAGCCAGCCTGAAGAACCTCAACCAGTTTCTACCGGAGCTGCCAGCAGACCTGGAGGCCATTCTGGAAAGGAGCGAACACCTAGATGGAGGGCTGGAAAGCTTGAAGGAGAACTTTCCATTCGCCCTGAGTGAGAAGCCATCACCTTTTGAAGAGAAACTACATTTTTCTCGCGTTCACATAATG
Seq A exon
GTAAGGGCTTGTTTATCCTGCTGTTCCCTGGACTTCCTAAAATGGCCCTTTGGTCCCCACCGCCCCAGATGAGTTCTGACATGGACTGGAGGGTGGGAGGAGGGAAAGGCGGGCTGGTTGTGACGGTGCTGCTCACTCTCTGATGGCTCCCTTTTCCTCTGAAAAG
Seq C2 exon
GATGAGCACTGGCGTGGAGAAGCGCTCCGGGAGAAGCTGCGGCACCGTGAGGACCGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTGAAGAACCTCAACC
R:
CTTGAGTCGGTCCTCACGGT
Band lengths:
245-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]