GgaINT0126689 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9078634-9079070:+
Coord C1 exon
chr17:9078634-9078909
Coord A exon
chr17:9078910-9079007
Coord C2 exon
chr17:9079008-9079070
Length
98 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
TGTGTTTGTGTTTCCAACAGGAT
3' ss Score
12.12
Exon sequences
Seq C1 exon
GTTAAGACTCAAGAAGACCTGGAAAAGAGACAAAGGGAAATAGAGAACACAGCAACATTGCTTAAACTAGAGGTTGAAGATGATATTAAAACAGGGTTTAAATCTTCAAGCCCATCTTCTCCAGAACTGTTGGAAGATTTGGAAGCGTTTTCTGCAGTAAATAAAAGTCTGCAGTGTGAATCTGACAATTTAGAGGAGACGTTTTCATTTGCTGATGCTGACAAAAGAATGTTCTCATCGGAAAAAAAGTTGGATTTTTCTCAAATCTTCATAATG
Seq A exon
GTAAAAAAGCTTTCAGACAGCAGCTGCTGCTCACACCGCAGCTGAGTGTGTCTGTACTGGTAATGCCCAGTTGCTGAATGTGTTTGTGTTTCCAACAG
Seq C2 exon
GATGAACAGTGGCGTGGAGAGGCTCTCCGAGAGAAACTGCAGCATCACGAGGATCGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTGGAAGATTTGGAAGCGT
R:
CTCTCCACGCCACTGTTCATC
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]