DreINT0007153 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62709224-62709654:-
Coord C1 exon
chr5:62709493-62709654
Coord A exon
chr5:62709287-62709492
Coord C2 exon
chr5:62709224-62709286
Length
206 bp
Sequences
Splice sites
5' ss Seq
GAAGTCAGT
5' ss Score
1.02
3' ss Seq
TGATAATTTGCTGTTAACAGGAT
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTGCAGAAGCAGGAGGAGGAGAGCAGTAGTGCATTCTGGGAGATCAACCGCAGCACAGCGGAGCTCGAGACGCCCTCTAGTGCCTCCTCAGACACTGACAGCCTGAAAGAGAACCGGCCTGCTGTTACACTCTCCATGGGGAATCCGGCATACAACACTGAA
Seq A exon
GTCAGTCTTTCTTTTTAAGTTTTAATTCTTCATATACCTGAAATATCTGATCATTCCGTTGAACTCGATATGTTGTCTCTAGCTCTCACATCATGTTTATGCTTTTGCATTATTTGAATCTAGTGCATTTGCAAACTAAGTGTCAGTAATGCATCAAGAGCATAGATGCAGTACACAGGCTAATGTTGATAATTTGCTGTTAACAG
Seq C2 exon
GATGAACAGTGGCGAGGAGAAGCGCTGAGAGAGAGACTGAGGCAGCAGGAGGACCACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=NA C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCAGGAGGAGGAGAG
R:
CAGGTGGTCCTCCTGCTGC
Band lengths:
220-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]