RnoINT0038582 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14368000-14368490:+
Coord C1 exon
chr3:14368000-14368263
Coord A exon
chr3:14368264-14368427
Coord C2 exon
chr3:14368428-14368490
Length
164 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
TCCTTTTCTCTCTGAAAAAGGAT
3' ss Score
7.29
Exon sequences
Seq C1 exon
GTGGCAAACCAGAAAGACTTCGAGAGGAGGCAGATGGAGGTCAGCAATGCAATGAGGACACTGAAGTCTGAGGTGAAAGACGAAATCAGAACCAGTCTGAGGAATCTCAACCAGTTCCTTCCAGATCTACCAGCAGATCTCACAGCTATTTTGGAAAGAGATGATAACTTAAGAGAGCTGGAAAGCGTGAAAGAGAACTTCCCATTTACCACAAATGAGAGAATTTTTGAAGAAAAATCCAACTTTCCCCAAGTTCACATCATG
Seq A exon
GTAAAGTTTGTCCTGCTCTCCTCAGGCCTTAGTGATAGTTTGATTCCCACCTCCCCCAGTAAAGCTAAAAACAGATTTTGGGCCTCCAGGGTAGGAGGGAAAGAAGGTTGGCTCCCACTTGTAGCAGTTGGTGACTCATTGGTCTCCTTTTCTCTCTGAAAAAG
Seq C2 exon
GATGAACACCGGCGTGGAGAAGCACTCCGTGAGAGACTGCGCCACCGTGAAGATCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGAGGTCAGCAATGCA
R:
TTCTCCACGCCGGTGTTCATC
Band lengths:
255-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]