BtaINT0040495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112427321-112429546:+
Coord C1 exon
chr8:112427321-112427462
Coord A exon
chr8:112427463-112429359
Coord C2 exon
chr8:112429360-112429546
Length
1897 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TATTATTAATATCATTTTAGCTC
3' ss Score
6.01
Exon sequences
Seq C1 exon
CAAAATTGAAGGCATAGAAAATCTGCACAATCTACAAAAGCTGAACCTTGCAGGAAATGAAATTGAGCATATTCCAGCGTGGTTAGGGAAGAAGTTAAAATGTTTGCGAGTCCTCAATCTGAAAGCCAACAAGATATCATCA
Seq A exon
GTAAGTTGTTCAAAGTAGCAAGAATATTTACATTTTTTGGACTTGTTGAGGTAAAAAGATTAAAATCTAAGTGTTTTTTTTTTTAATGGGACTTCTTCTGATGTCCTTGACCAAACATCAAATATAACTTAGTATTCTCTATGGTAATTAAATATACACAGACCTGGTTTTGCATGATTACATGGTAACTGGGAGTTGATCCCATAGCATTTTCCCATCTTTCATTTCACTTGAGCCTCTGAGTACTTTTCTTACAGAGACAGTGCAAGGGTTATTTTTATAATTCTGTGAATTAGGCACCATTTTTTTATTCCCATTTTTAAGTAAAGTCTTGGAGAGGTTAACTCTCAAGTTAACCCAAAGTCTTTCAGCTTGTGCCGGAATCCATGTCACTGAATGCCTGGAGCAGAGTTCTTTTTTTTTTTAATTTATGAGTTAATCTGAATTAACCTTGATTATAGTATTAAGTGTTACAGGAATTGTTAATCACTAGCTTTTTGTAGTAAAGCAACTTTATCACGGTTCATATAAGCTGATGGTGACATGTATTTTTCTCTGTCATAAAATATATGAGTATATTTTATAATTTTCTTGTAACATTTATACAGTTAGATATTCAATAAACATTGCAAAGTGAAAGCATTAATTTATTTAAATCTGTATTAAAATGGAAACAATCCTCCTGTAATTTAAAGAACTTAAGCCTTAGAATAGAAAATAAAAGAGGTGACTTCTAGTATGGGTCTAGATTTGCCTTCTGTGATCTTTGGATAAATTTTCATCTGTCTAAAACTCACTGTTTAAATTGGAAAAAAATAGTTTCTCCCCTGCCTTCTTTATGGAAGTGGTATAGGGCTCAGATGGAATGATAAAATGTGAAAATAAAAACTTTAAGGAATATAGCCTTAGAGTTATTTAGTATTTTACACTTTTACCGGCATAAGGTAGTAATAATAAGTAACTTTTGTTTAAGGCTGTGCAGTGTCTCTGCTTTCCTGTTTCATCTTTATGAAGGTCTGATAAGGTGACTCTGCCATTTCACTGTGGCAGCCCAAAAGACTCAGACCTGAGCTCCATGCCACGTTACACGGCGTCACCGTGGAGATCTCGCAGTTTAGCGGGTGATGGGAGGAGGTAGCCAGGAATTCATCTAACATGGCCACACACGTTCCTAAAGTAGTTGATCCCTAGATAGTACTGTTAGCTATCAGGAAGCTCATTCAGTAAATGCTCATCTATTATTATGTCTAGTTTTGTCCACTCTCTCGTCTGTTCGTGTTTGAATTGGCTTCAACGAGAGCCTCCGTTCAGGGAGATTTGTCTGCACGGGCTATTAGTAGTAGTATTCTCAACCTTTTAAAATCCCTCTCTGGATAAATGTAAAACCTCACTTCAGAACTGTGAATGTTTCTATGTATCCTTATTTCTTTTAAATCAACTATAACAGTTATCTGAAGATTTACAAAACTTCTTTTTTATAGCCATTTATGTTTTTGATTTGTTCATTCAGTGTAATGAAAAGATAATAGGATTAGAGTTACCCAGTCTTGAATTCAAATCCTATTTCATTCACATATACTCTTTGAGCTTTGAGCAAGTCACCTAAACTCTTTGAACCTCAGTTTCATGATCTATAAAATTCAGATGCTATGTCATAGGTTTCTGTGAGGAGTCACAGATGACATGGCATGTGGAAAATGCCAAATATTGCTCTTGATACATTCTAGATCCTCACATATTCCTTTCTGTTCTCCCTTCAAACTACCATTGGATAATGGGTGTTATGAATAGGTTCCTTGTCATGATAATAGCAATTTCCTTGACTTATTACTTTCCTTATGTATGTTTATGATGTTTAAATTCAATTATGCCAATAATATTATTAATATCATTTTAG
Seq C2 exon
CTCCAAGATGTAAGCAAGTTGAAACCACTTCAAGATTTGACTTCTCTGATCCTAGCTGAAAATCCAGTTGTGACCCTTCCCCATTACCTTCAGTTCACCATTTTTCACCTCCGATCACTGGAAAGTTTGGAAGGTCGGCCAGTAACCACTCAGGACAGGCAAGAAGCTTTTGAGAGATTCAGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(29.2=100)
A:
NA
C2:
PF145801=LRR_9=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATTGAAGGCATAGAAAATCTGC
R:
AACTGAATCTCTCAAAAGCTTCTTGC
Band lengths:
326-2223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]