MmuINT0034569 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35118055-35120123:+
Coord C1 exon
chr2:35118055-35118196
Coord A exon
chr2:35118197-35119936
Coord C2 exon
chr2:35119937-35120123
Length
1740 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CTGCTGTGGTACCATTTCAGCTC
3' ss Score
7.12
Exon sequences
Seq C1 exon
CAAAATTGAAGGACTAGAAAACATGTGTAACCTGCAGAAGCTAAACCTAGCAGGTAATGAAATCGAGCATATTCCAGTGTGGTTCGCAAAGAAATTGAAATCTTTACGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
Seq A exon
GTAAGTTATTCAAAATAGCAAGATTATTTTTCCTAAAATTTAAATGATTTGGACGGTAAAGGTTTTGTCCATGTATGTATTTTACATTGAGCGCTATCCCTCTCCTGCCCAGCACCCTCTCTTTTACTGCCCCTTGCTCCTAGTCCCTTTATCCTCCTAAAATCTTCTTTATTCAGATTTCTTATTTGTTGGGAAAATATTTAAAGAGTGAGATTTCTTTTGGCGTCCTTGTTTCATTGGCCATATGCCATATTCAGATATAACCTAAGATTCTTCAGTGTATTAAATACAGACTGCCCTCATGTTCTTAAGTTCAGTGGTAACACATTGCACTGCCTTACATCCCTCTGCCTAGTGCCATTCTTCATAGGTAATAAGGATGCAATGGATATCTATTTAAAGTTATTCTGAGATAGGAAATTTGATTCCTATTTTTCAGATAAAGTCTTAATTTCTTTCATGCTTTGTTAGAAAATGCCTCCTGAATACCTAATACATTGGCTGTTACAACTGGAACAATCATGATATAACTTAATGACAATTGTCATAGATTAGAAAGGGAAAGTCCACAGGCCTACACTGCCCTAATATGACCCTGGAGAGTCTTTTGATTTCTATAAATTGTCTAAAATAGAGAAAATGCTTTCTAAGAGGCTCAGGTGAACCGAGAGGAATAAAACTGCTTCAGAAACTTTAGAACAATGAGTAACTAAGGCTTGTTCTTTATTCCTTCAAGTGTGAAGACAGATTAGAATACACACCGTTTTTTTCATCTTACTGTTGATTATTTCGCTTCTCTGTTCCTTACATGGAGGTTGTGGTGAGGCTTCTCTCTGTAAGCCAAGCACACCTCAGACTTGTAGTTCTCTTGCCTTTGTCTTCACAAGTTGGTGCACAGGCATGCTCTGCCACACTCAGCAGGAATCCTTCCTTCTTATCCCATTGTTAAAAAGACCTGGGAAAGACACTCTCCCTTCTACTGCCAGAGCTCCCGAGCCTCAGAGTGGAAGCCTTAGACCATTCAGTATGTCACTGACAGCTCTCGAAACTCACGGGATTACAGGAAGACGCAGCCCTGGATTTACAGTCGACCCCAAGTATTTCTCAGGGTTCTTGATTTTAGGTCATACCCAGTGTCTGCTGAAAAACAGGAAGACTGTTCAGTATTGATGATTTGTAATCATATATCATCTTCTCATCTATATGTTTGGCATTGACATCATTAAGGGTAATAGATATTTATTTGGGGGAAAATATGTACTTGTACTAGCAATTTAATTTAATTCTCCCAACCTACATAAGTTCTTTGAATAAACAAAAGAGTTTTCAAAGAATGTGAATATCTACATATGTTTGAATATCTATATATGTTTTTATATTTTTTAACTATCAGTTATAACTCAGTTATCTTCATATTTACCAAAATCCTTCATAGCAGTTCATTTTATGCATACTTGATCAATACAAAATAAAGACATTGCAATATAGACTGAGATTGAACCTCTATTTTATTCACTTACAGAGTCTGAGCTAAGGCAAGTCCCACTTTGAACCTTGACAATGCATAGTACTGTCTGACACACCAGTGCTCACATGGCCCTTGGTGCCCCTTTCTCACACTGCTAATTAGGGGCCATGAGTTTCATAAATAGATTTCTTGACATGCTAAAGGCAATGCTGTTGATTTATTACTTCCTTTGTTCGTTTAATCATTCCTATACTGCTGTGGTACCATTTCAG
Seq C2 exon
CTCCAGGATGTAAGCAAGTTGAAGCCACTTCAAGATTTGACTTCTTTAGTCCTCATTGACAATCCAGTTGTGGCCCTTCCGCATTACCTCCAGTTCATCATTTTCCACCTCCGTTCCCTGGAAAGTTTGGAAGGTCAGCCAGTAACCACTCAGGATAGACAAGAGGCTTTCGAGAGATTCAGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(77.6=93.8)
A:
NA
C2:
PF145801=LRR_9=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGAAGGACTAGAAAACATGTGT
R:
CCAAGCTGAATCTCTCGAAAGC
Band lengths:
326-2066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types