GgaINT1009813 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8348405-8349498:+
Coord C1 exon
chr17:8348405-8348546
Coord A exon
chr17:8348547-8349311
Coord C2 exon
chr17:8349312-8349498
Length
765 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ACCATTTGTCTTTCATTTAGCTT
3' ss Score
8.07
Exon sequences
Seq C1 exon
TAAGATTGAAGGTATGGAACATTTACATAACCTACAAAAGATGAACCTTGCAGGGAATGAGATTGAGCATATTCCTGTGTGGGTAGGGAAGAAACTGAGATCCCTGCGCATCCTTAATTTGAAACAGAATAAAGTATCATCA
Seq A exon
GTAAGTGATTATAATTAAGGAACAGTCTTTTCATGAACTGGTAAATTTATATTGTTTGACCTACTCTGAATTACTCAGTGTCTTTCAGTTGTCAGTACAGTTGTGAGCCTAACAAAGCTGGTTTTTAAGGAGAAACTCTGCTGCTGTTCCACATATTCAAAGCATAAATATACTTTGTTTTTCAGGAAAGTGTAAAATTTTGAAAATTGGAAAAAGTTTGAAGATGTGATGGCTTTTTCATGCTAGTGGTGGTGTCCCTTATGATAAGTTAATTACGTGTTTTGGGAGACCTGTAGATAATATATTTGCATTTTTGTATTTAGGGCATGACTAAATATACTTCTGTGGTCCAGGTTAATTTCCATGTTTTGTATAAATAGAGTGTCTATGAAATTAAGTCAGTAGTACAGTTTCTGAAATAGTTATAGTATTTAAGAAGAAAAATGAACCAGCTTTGAGTACTCTCATCAGTTAATAAAATCTCCTTTCTCATGAACTAGTCTGGAGGAATGGAAGGCTGGATGTATCCACAGGCTCTGCGATCTTGGACTTCCCAAGGTCAATCTTGATGAAATTTGCTCTGTTTGCATTGTATTTTGTTTTTGTTTTGTTTTTTAATGGAAGAAACAGTTTGTTTTTTAGGAAGTTATTTTAGTCTTTGTATGGATCTAATGTGTAGTGTTCTATATAGTCAAATTCAGTAATGTCTGTATTACTTGTTCTTGGAAGGATGTCTAATCATTGTACCATTTGTCTTTCATTTAG
Seq C2 exon
CTTCACGAAATAGCTAAGCTAAAGCCTCTACAAGATCTGACTTCTCTGTTCCTTGCTGGTAATCCAGTTGCAAGCTTGCCTCACTACCGCTTGTACATCATATTTCACTTGAGAGCATTGGAAAACTTGGATGGACAGCCAGTGACAAATCATGACAGAGAGGAAGCTCTAAAGAGGTTTGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(77.6=93.8)
A:
NA
C2:
PF145801=LRR_9=FE(37.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACCTACAAAAGATGAACCTTGC
R:
AAATCAAACCTCTTTAGAGCTTCCT
Band lengths:
302-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]