RnoINT0038583 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14311116-14313181:+
Coord C1 exon
chr3:14311116-14311257
Coord A exon
chr3:14311258-14312994
Coord C2 exon
chr3:14312995-14313181
Length
1737 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCGCTGTGGTACCATTTCAGCTC
3' ss Score
6.79
Exon sequences
Seq C1 exon
TAAGATTGAAGGACTAGAAAACATGTGTAACCTGCAAAAGCTAAACCTAGCAGGTAATGAAATCGAGCACATTCCTGGGTGGTTCTCAAAGAAACTGAAGTCTTTGCGAGTCCTCAATCTGAAAGGCAATAAGATATCATCG
Seq A exon
GTAAGTTGTTCAGAATAGCACAATTTATTTTTCCCAACATTTAAGTGATTTGGATTATAAAAGGTTTGTCCGTGCGTATGTTTTACGTTGAGCATGGTCCCTCATGCCCAGTAGCCTGTCTTTTCCTGCCCCTTCCTCCTGTAGTTATTCCCCTTTATCCTCCTAAAAGCTTCTTGATTCAGATGTTTTATTTGTTGGGAAAGTATTTGAAAAATAGATTTCCTTTAGCGTCCCTGTTTCCTTGGCCATATGCCATATTCAGATAGAACCCAGGATTCGTCATGTGTTAAACAGACTGCCCTCAGGTTCTTAGGTTCAGGGCTAACCTGGGATTGATGTCTCAGGGTTTTCCGTCTGTCAGGTCATTGCACTGCCTCACGCTCCTGGTGTCTAGTCCATCCTTACAGGTAATAAGGATGTAATAGACATCTATGTGAACTTACTCTGAGATAGTAAGTTTGACCCCCATTTTTCAGATGAAGTCTTAATTTCACTCATGTTTTGTTAGAAAATGCCTTCTGAACACCTAATTCATTGACTGTTACAACCGGAACAATCATGATTATAACTTAATGATAATTGTCATAGATGAGGAAGGGAAAGTCTACAGGGCTAGACTGCCCTAATATGACCTTGGAGAGTCCTTTGATTTCTATGAACTGTCTAAAATAGAGAAAATATTTTCTAAGAGGCTCAGATGAACCAAGGGACTAAAACTGCTTCAGAAGCTTTAGAACAATGAATGCCTAAGGCCATGTTCTTTATTCCTTCAAGCATGAAGACAAATTAGAATATACACCATCTTTTCCATTTTATTGTTGATTATCTCACTTATTTGTTACTTACACTGAGGTTGTGGTGAGGCCTTTCTCTGTAAACCAAGCACATCTCAGACTTGCACCTCTCTTGCCTCCATCCTCACATGCTGGCGCAGGCGTGCTCTGCCACACTCAGCAAGAACCCTCCCTTCCTATTCCATTGTTAAAAAGATCTGGGAAGGACACTCTCCATTTTACTGCCACAGCCCATGAGCCTCAGAGTGTAAGCCTTTTGCCGTTTGGTAGTCACTGCACAGCTCTCGAAACTCACAGGATGGTGGGAAGAAGCAATCCTGGATCTACAGTCTTCTCAGAGTTCTTGATGTTAGGCCACACCCAGTGTCTGCTAAAGCACAGACGTCTGTTCAGTATTTGTGATGTGAAATCATATACCATCTTGTCATTATATGTTTGGCATTGACATCACTAGGGTGATATATGTTTCTTTGGAGGAAATAGGTACTTGTACTAGCTATTTAAAGTAGTGTCTCCTAACATACATAAGTTCTCAGAATAAACAGAAGAGTTTTCAAAGAATGGGTATTTAACATGTTTTTATGGTTTTTAACCATCAAGTATAATTCAGTTATCTCAAGATTTACCAAAATCCTTCATAGCAATTCATTTTATGCTTACTTGAACAATCCAAAATAAAGACATTGTAATGTAGACTGAGATTGAACCCCCATTTTATCTCTTACAGGCTCTGAGCTAAGGCAGTCATACCTCTGAACCCTGACAATGCATACTACTGTCTGATACACCAGTGCTTACACGCCCCTTGCTGTCCCTTTCTCATGCTGCTCTTAGGGGCAGTGAGTTTCATAAATAGGTTTCTTGACATGTTAAAAGCAATGTGTTGATCTATTACTGCCTTTGTTCATATAATCATTCCTTTACCGCTGTGGTACCATTTCAG
Seq C2 exon
CTCCAGGATGTAAGCAAGTTGAAGCCACTTCAAGATCTGACTTCTCTAACCCTCATTGACAATCCAGTTGTGGCCCTTCCTCATTACCTCCAGTTCATCATTTTCCACCTCCGTTCCCTGGAAAGTTTGGAGGGTCAGCCAGTAACCACTCAGGATAGACAAGAGGCTTTCGAGAGATTCAGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(29.0=100)
A:
NA
C2:
PF145801=LRR_9=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTGAAGGACTAGAAAACATGTG
R:
AAACTGAATCTCTCGAAAGCCTCT
Band lengths:
326-2063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]