BtaINT0040499 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112429360-112432619:+
Coord C1 exon
chr8:112429360-112429546
Coord A exon
chr8:112429547-112432425
Coord C2 exon
chr8:112432426-112432619
Length
2879 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TATTCAATTTGTACTGGTAGAAG
3' ss Score
3.22
Exon sequences
Seq C1 exon
CTCCAAGATGTAAGCAAGTTGAAACCACTTCAAGATTTGACTTCTCTGATCCTAGCTGAAAATCCAGTTGTGACCCTTCCCCATTACCTTCAGTTCACCATTTTTCACCTCCGATCACTGGAAAGTTTGGAAGGTCGGCCAGTAACCACTCAGGACAGGCAAGAAGCTTTTGAGAGATTCAGTTTAG
Seq A exon
GTAAAGTGACATATTTTTTAAAAAACTAAATTCGGATGGGAGAGGAATTTATTTTCAGAAATGATCCAGAAAAGATATATTTGTTATTAACTTTATAATGCTATTAAAATTTGCATAGAAAATGGCACCACAGATCAGTGAACTCAGCGAATACTCATCAGGCGTGTGCTGTGAGCCAGGCTCTGTATGTGGCACTAAAGATAGGGCTAGCAAGATGTAAGGCACTGGCCTTCAGGCAGCTTCTGTTTCAGTGGAGAAGACAGACAAAAGACAACTAAACCCAGATAAAGTAACAGAGCTGAACCCCTTTTATGGAAAGTGGTGTAAAGGAATGGCTGTCTGAGGAAATGACATATAAGCTGAAGGCAAAGGCGGGAGAGGATGAGGGAGAGGGAAAAGCTTGTACTTTGCCATTGGGAAGATGCTGGTGAGTTAAGAGACAGAAAGAAGATCAGTCTGACAGGAGGATAGCGCAAGTTGATGGAGAGATGGGGGCGAGATGACACGGGGCCTGGGCTTTGGGTGTGTTCCAGGCGCTGCAGAAAGTACTGACAGCATTTAAGCAGGTGTTATATGTTAAGATTATTTCTGATGCAGGATGGAGAATGACTTAAAGCAGGGCAAAATGGTGATAAAGGGGCATGTTGGAAGGCTATTGGCTTAGGAATGTTGGTGGCCTGTATTTAGATGATAGATGTGGAACAGACAGATCCACTTTGGAAGTGGAGTCAGCAACACTTTCTAATGGATTAGATAATCCTCAGGCTTCTGGCTTAAGTAAGTAGTTTGCTGGTAATATTGTTTTGAAAAATGGGAGAACTTAGAACTCTGAGTTTGAATGTCTGTGAGGTAGTCAAGAAGAGAATCAGAAATGTGTGTCTGGGGTTCAAAGAGATCTGTCCTAGAGATGTAAATTTGGGAGTCGTCAGCATAAAAATGATACTTAATTCCATCTGAATCAACTAGCTCTCTCGGGCAGGGCAGCCGTTGGGGAGAGCAAAAAGGGGAGCCAGCTTAGAAAACAGAAAGAGAGGCCATCAAGGGAGGACAAAACCAGGAAGTAGTGGGTTGCAAAAGTCTGAAGTTTTCAGAAGAGGAAGTGGTCAACTATGTTGAATGTCACTGAGACGAGAAGAAGAAAGATGAGCGCAGAGAAGGGCTTTTGACTGGCAACATAATGATGAGCTCAACAAAAGCAGTTAAGTAGTGGTTGGAACAAATGCTAGATTATAGATTGAAGAATGAATTGGGAGGAAGACATTTAGATAAAGATTTGAAATTTCCTCCCACAGTTTCTCTCCCCTAGTACCTAATAAATGAGTTTTAAAAAGTTTAAAAAATTTTCGCCAATCACTTCCACACCAGGAAATTGTCAGAAGCATCAGAGCTGGTAATCAAAGACACAGAACATTCGAGAGCGAAGTGGAGAGAGAGATCGTGGCTTAGTTTCTTTGGTCCTTGGGAGGCCAAGGAGATGAGACCAGAGGAGAAGCATAAAGACTGTCTCTTGATAAGTGCAGTGGGACACTTTCTCCATCAGAAGGAAGAGAAGATGTGTGTAGGTGTTAGTTTTGTTGCTTTGGTGGTAAGAAAATGAGGAGTTTCTTCTGGTGGGGTCTGTCTAAAGTATGAGATCATCAACTGAAAAAAGAAAATAGAAGTATGGGAGTTTAGAAGGGAAGAGGAGGTATGAAATAGCCTAACACAATAGTTATGTAATAGTTACAGGCTATGAACCTATATGTTCAACCACTTGAAACTGACATTAGTCCTTGTTTATTGATAAAAACAGCAGTTTCATGTGGTTTGATCCAACACTTGAGAAATGTGGTAAACTTTGATTAGTTTGGGATCCCCCTAACTCAACATTTGTTTCCCAGAAGGTGATGTTTTGGAATCATTAAAAAACATAAATGATGCAAAGGGAAGTCATGTTGGGGGAAGTGTTTAAAGTACTTATGATTCATTCTCAACTCTGAATGTTAATTAGGAGCTTTTAGTGATGCTGAGCTCTTGGGATCCAGTGGTAACACAGACAGATGCAGTTTCTGCTTTCATAAAACTATAGTGGGCAAGGCAGACACCAACTCCCCCTGTGACGAGGGCCACGGCAGAGGTGCAGGGTGGCATCATAGCATTCCTGAGAAGCATCTTATCTGGGGAGGGTAGAGTCGGGGCTGGGTTCTCATAGTGTTTTATTTTAAAAAACCAAACCTAGAAGATGCAAAAGAGGCCAGTAGGAGATGGAGGAAGACAGTTCCAGGCAGAAGGTGTAGATGAGAACAGGCATCAGAAAACTGAAGAAGTGGAATCATTTCAGAAATGTGTGCTTGAAAACAGGACTGGAGAGGGGATTTGGGACCAAATCATGAAAAGCCTTGTCAGTTCTTGATGTAAACCTTTTGGATCCTATCCCAAGCATCATAGGAAGCCTTAGAAGGATTCTTAAGATGTCTTCCCTGGTAGCTCAGCTGGTAAAGAATCCACCTGTCATGAAGGATAACATGGTATTTTATTTTGTAAGCATGCTTGCAGCATCCTTTAAAGTGTAATCACTAATATCAAATAAAATTTTGCATGTTTTTTTCTAAGAGACTTGAAAAAAGCCGCCTCATTTATCAACACTAGTTAAATGCTAGGAATTAAAATGTTATCTTTTAAAATCGTTATCCAGATGATTACGCCTTCCTTCCTCTTAGTATAAACCACTTTCTAGCTCAAAATAGTCTTTTTTTTCCTAAACCATAGTGAATAATTTAAAAAGTAGAATTGTATTTTTACTGTTCTAAGACTTCTTTTGCTGTTATTTAAGAAATAGTCCTGCCTTTCTTCAAGTAGAAAATATAATGATTCATAAACTATTCAATTTGTACTGGTAG
Seq C2 exon
AAGAGGTAGAAAGACTGGAAAGAGACCTGGAGAAGAAGATGATGGAAACTGAAGAGCTTAAAAGCAAACAAGCACAGTTCCTTGAAGAAATTAAAAATCAAGATAAATTGAACAGATCATTAAAAGAGGAGGCTATGCTACAAAAGCAGAGCTGTGAGGAGCTCGAGAGTAACCTTACCACGAAAAATGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(38.5=100)
A:
NA
C2:
PF145801=LRR_9=PD(6.2=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]