GgaINT1009814 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8349312-8349799:+
Coord C1 exon
chr17:8349312-8349498
Coord A exon
chr17:8349499-8349605
Coord C2 exon
chr17:8349606-8349799
Length
107 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGTA
5' ss Score
3.02
3' ss Seq
TTTTTTACTTTGCTTTTCAGAAG
3' ss Score
9.5
Exon sequences
Seq C1 exon
CTTCACGAAATAGCTAAGCTAAAGCCTCTACAAGATCTGACTTCTCTGTTCCTTGCTGGTAATCCAGTTGCAAGCTTGCCTCACTACCGCTTGTACATCATATTTCACTTGAGAGCATTGGAAAACTTGGATGGACAGCCAGTGACAAATCATGACAGAGAGGAAGCTCTAAAGAGGTTTGATTTAG
Seq A exon
GTAGTAATATTGTATTAGAACTATGGTAAATGACACCAAACAAGTTTAGCTGGAAAAGAGAAAGAGTTCTATTTGAATGTCTTGGTTTTTTTTACTTTGCTTTTCAG
Seq C2 exon
AAGAGATAGAAAAATTAGAAAGAGAGTTAGAGAATGCAATAAAGGAGATGGAGAACCTTAAACTTAACCAGTCTAAAGTGCTTGAGCAACTTCACCATCAAGATGAGGTCAACAAATCATTAAAAGAAAAAACTTTGCAGCAGAAGCAAAGCTGTGAAGATCTACAAAGGGATGTGGATACCAAAAATGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.246
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(37.8=100)
A:
NA
C2:
PF145801=LRR_9=PD(18.8=55.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCTGTTCCTTGCTGGT
R:
TGATGGTGAAGTTGCTCAAGC
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]