MmuINT1007437 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35119937-35122853:+
Coord C1 exon
chr2:35119937-35120123
Coord A exon
chr2:35120124-35122659
Coord C2 exon
chr2:35122660-35122853
Length
2536 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ACTTCGTTTTTTATTGACAGAGG
3' ss Score
6.65
Exon sequences
Seq C1 exon
CTCCAGGATGTAAGCAAGTTGAAGCCACTTCAAGATTTGACTTCTTTAGTCCTCATTGACAATCCAGTTGTGGCCCTTCCGCATTACCTCCAGTTCATCATTTTCCACCTCCGTTCCCTGGAAAGTTTGGAAGGTCAGCCAGTAACCACTCAGGATAGACAAGAGGCTTTCGAGAGATTCAGCTTGG
Seq A exon
GTAAGGTGATGCTTACAAAGCAAGCAAACAGACAGAGAACACTAAACTGGAATGAGAAGGGAACTGACCTTTGAAAGTTCTGTAGAAGGATAGGGTCTGCTGAAATGGTTCAGAGGGTTAAGGCTTTTATTGCCAGACCTGAGGACCTGAGTTCAGTTCCCAGGACCACTTGGTGGAAGGAAAGTACAAACGCCTACAAATTGTCCTATTACCTGTATTACCTACCCCATGTCAGGTGTGCAGCCCTACTCTCAGCCAATGAATAAAGGAACAAATATACCACACCTAACATTTAAAACAGGAAGGGTAAATTATAAACCTGATAATCCTACTAAAATGGAAATGGCACCATAAACTGGTTAATCAAGCAAGTATCTGTTGCCATATACTATGTACCGAAAGTTCCCCACCTCAAAAGTGATGTGTGTGTTTGTGTGTGTGTAAGGTGTGAGAAGAGGAAGAACAGTGAGCAGCCAAGAAAACAGTAAATGACAAGCTAGTGAGATCAGAGTACAGAAGACAGAGTTTCAGATGCCCAGAAAAGATTTCAAGAGAGCCAGTGGTCCCCATGGTGAATGGGCTGACATATGAGTAAGTAAGATTAACACAGACATGGATTTAGAATTACTTTAGGCCTGGCAGTGGTGTACACACTTTTAATCTCAGCACTTGGGAGGCTGGTGACAGGTGGATTGCTAAGTTCAAAGCCAGCTCGGTCCAGGATAGCCAGGGCTATAACAGAGAAACCCTGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAACAAATGCTTTGGATTAGTGTTCCTGCTCAGAGAAGCTGGAGAGGGATGGGAACTGATGGTAGATAAGGAATGGGAAGGAGATATTGGATCAAAGGTTTGAAATTTCTACAGCAGTCTCACTCTTCCAATACTTAATAACTGTAATTCTTAAGTATTAAAGGTAAAGAAAAGATCTAAGACTTAAACACTCACTGATAGCTTCAAGGAAATGGGAAGAGACGACATGCAATTAATCCTCAAAATTTTTAGTAATGAAATAGCATTCCTGAGATCAGAAGGGAGAGGCAAGTCAGGCCTTTATTCCTTTACTTCATAAAAACGAGGTCCAAAGAGATTAGATTTTGAGAGGGGCAGGGGAGAGCTCTCATTGATCATCTTTTGGTAGGAGGGATACTTTCTTTTTTTTTTTTTAAAGATTTATTTATTTATATGTAAGTACACTGTAGTTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAAAGCAGTCTGAAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCAGGGATACTTTCTTGATCAAAAAATAGAGAGAAAATAATATGTATGTGTCAGTACCTTTGTTGTCTTTGCGGTAGGAGAATTAGGGCCCTCCCTTAATGAAACATGAAGCTCTCTGCTGAGAAAGACTAGTTGGAGGATGGGAGGTTTGAGGAGAAAGGATATGAAGTGACTATTTTAGAGTGTTGAGGAATCAGCCTCTCTTTGATCTGAATTTGAAATCGGTGTTAATCTACTTTTGATCTACAAAAATGGCAGTTTCACACCAGTGAGATGGCTCAATGAGGAAGGATGCTCTCTGTGCAAGCCTGATCAGACACAGCTCATCCTGGAACCCACAGAAGGGTAGAAGAGAGCCTCTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTACTCACACATGCAAACACATACACACAAATAATAATTATAGTAAAAATCCCTTCAAGTTACCATACCTTTCTTAACTCTTTAATATAGGTCAGATTCAGAGTAGAGAAGAGCCTCTGTGAGTGTGTGTGTGTGTGTACTCACACATGCAAACACATACACACACAAATAATAATTATAGTAAAAATCCCTTCAAATTGCCATACCTTTCTTAACTCTTTAATATAGGTCAGATTCAGAGTAGAGAAGAGCCTCTGTGAGTGTGTGTGTGTGTACTCACACATGCAAACACATACACACAAATAATAATTATAGTAAAAATCCCTTCAAATTGCCATACCTTTCTTAACTCTTTAATATAGGTCAGATTCAGAGTAGAGAAGAGCCTCTGTGAGTGTGTGTGTGTGTGTGTGTATGTGTGTGCGTGTGTGTGTGTGTGTGTACTCACACATGTAAACACATACACACACAAATAATAATTATAGTAAAAAATCCCTTCAAGTTACCATACCTTTCTTAACTCTTTAATATAGGTCAGATTCAGATTCAAGGTGGTCAACTTTTTCCCTAAACAGCATGGCAGCTGATTTTGAAGTCAGTTGTGCTACACAGTTCTTAGACTTGTTTTGCACTGTTCTGAGCATACTTGATGTTTTCCAAGATGAGAATATAATGATGTTAGCTACTTCGTTTTTTATTGACAG
Seq C2 exon
AGGAGATAGAAAGACTGGAAAAAGACCTGGAGAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAGCAAACAAAGTTTCTCGAGGAAATAAAGAATCAGGATAAACTAAACAAGTCATTAAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAGCACAAAGAAGGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(38.0=100)
A:
NA
C2:
PF145801=LRR_9=PD(6.1=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types