RnoINT0038586 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14312995-14315305:+
Coord C1 exon
chr3:14312995-14313181
Coord A exon
chr3:14313182-14315111
Coord C2 exon
chr3:14315112-14315305
Length
1930 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TACTTCATTTTTATTGACAGAGG
3' ss Score
5.22
Exon sequences
Seq C1 exon
CTCCAGGATGTAAGCAAGTTGAAGCCACTTCAAGATCTGACTTCTCTAACCCTCATTGACAATCCAGTTGTGGCCCTTCCTCATTACCTCCAGTTCATCATTTTCCACCTCCGTTCCCTGGAAAGTTTGGAGGGTCAGCCAGTAACCACTCAGGATAGACAAGAGGCTTTCGAGAGATTCAGTTTAG
Seq A exon
GTAAGATGATAGATACTTAAAGAACACCAAACCTGAATGTGGAAGGAACTTATCTTTGGAAGTTCTGTGGAAGGATAGGGTCTGGGAAATGCCTCAGAGGGTAAGGACCTGAGTTCAATTCCTGAGACCCACTTGGTGGAAGCACAGAGCCAACTCCGCAAGCTGCCCTACTACCTGGATTGTCTGCCCTAGATCAGTGTGCTTCTGTTCACAGCCAGTAAGCAAAGGAACAAATACTCAGTTTTAAAAGGGACATATTACCACATCAGACATTTTAAAGAAGGATAAATTATAAACCTTATAATCCTACTAAAATGTACATGGAAATGGCACCATAAATTGGTTAATCAAGCAAGTATCTGTTGACCATATACTATGTACCAAAGTGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAGGTGTAAGAAGAGGAAGAATGATGAGCCAAGAAAACAGTAAATGGCAAGCTAGTAAGATCAGAGTACAGGAAACAGTTTCTCATGTCCAGAAACGATTTCAAGACAGCAGGTGCTCACCCTGCTGAGTGGACTGACAGAAGAGTAAGCAAGATCAACAGGGACATGGCTGTGGAGTTGCTTCAGGCTTGGCAGTGGTGGGAGGCAGTGGTGGTGCATACCTTAATCCCGTACTTGGGAGGCAGTGGGAGGTGGGTCTCTGAGTTCGAGACCAGGACAGTCCAGTATAACAGAGAAACCCTGTCTCAAAAAATTTGCTTTGGATTGGTGTTATTGCCTGGAGCAATTGGAGAGGGATAGGAACTGATGGTAGTTTAGCAGATTAAGGATTGGGGAGGAGATATTCGATCGAAGATTTGAAATTCCTGCAGCGGCTTCACTCTTCCAATACTTAGTAATTGTAATTCTTAAGGATTAAAGGTAAAGAAAGATCTAAGATTAAATACTCACCCATAGCTTCAAGGAAACGTAAAGAGATGCAATGAGGTTTAATTAACCTCAAAGTTTTTAGTAATGAAACAGCACTCCTGAGATCAGGAGAGACAAATCATGCCTTCATTCCTTTAGTTCATAAAAATGAGGTCCAAAAGGATTAGATTTTGAGAGAGAGGGTGGGGATGGGTGTCATTGATCATCTTTTGGTAGGAGGAATACTTCCTTGTCAAAAAAGGAAAAATAATATGTGTGTGTCAGTACTTCTGTTGTCTTCGTCGTAGGAGAATTAGGGCTCTCCCTTAATGAAACATGACGCTGTCTGCTGAGAAAGACTGGATGGAGGATGGGAGGTTCCAAGAGAAAGGAGGATATGAAGTGCCCATTTTAGTGCTGGGAAATCAGCCTCTGTTCGATCTGAGTTTGAAATTGAATTTGTAATCAGGGTTAATCTACTTTTGACCTTTAAAAGTGGCAGTTTCACACCAGTGAGATAGCTCAGTGAGGAAGACTGCTTTATGTATAAACCTCATCAGTCATGTCCCATCCTGGAACATCTACAAAAAGGTAGAAGAGAGAGAAGAGAGACGGTCCCACAAAGTTGTCATGACTTCCGTGCACACACACTGTGGCTTCTATGCTTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGCGCGTGTATGTGTGTGTGTGCGCGTGTATGTGTGTGTGTGTGTACTCACACATGCAAACACATATACACACAGATAATATCTATAGTTAAAAATCCCCTCCAATTACCATACCTTAACTCTTAGTACAGGTCAGATTCAAATTCAAAGTGGCCATCCTTTTCCCAAAACACCGTGGCTGCTGAGTTTGAAAGTCAGTTGTGTTACACAGTTCTTAGACTTGTTTTGCCAGTGTTTGGAGCATGTTCGACGTTTTCCAAGACAGGAGTATAATGACCAATGAGCTACTTCATTTTTATTGACAG
Seq C2 exon
AGGAGATAGAAAGGCTGGAAAAAGACCTGGAAAAGAAGACAGTGGAAACAGAAGAGCTTAAGAACAAACAAACAAAGTTTCTTGAGGAAATAAAACATCAGGATAAACTAAACAAGTCATTGAAAGAAGAAGCCATGTTACAAAAACAGAGCTGTGAGGAGCTAGAAAGTGACCTCAACACAAAAAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.126
Domain overlap (PFAM):
C1:
PF145801=LRR_9=FE(38.3=100)
A:
NA
C2:
PF145801=LRR_9=PD(6.2=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGTTGAAGCCACTTCA
R:
GTCACTTTCTAGCTCCTCACAGC
Band lengths:
349-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]