BtaINT0042243 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012837 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr1:153368470-153380163:-
Coord C1 exon
chr1:153380101-153380163
Coord A exon
chr1:153368533-153380100
Coord C2 exon
chr1:153368470-153368532
Length
11568 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CAATCCTTCTTTTATTTCAGGGG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GGTCCAAGAGGAGAAGCTGGTGTGAAAGGAGAAAAAGGAAATCTGGGAAGTAAAGGTCCCCAG
Seq A exon
GTATGTAACGAGAGACAGTGTCTGCCTCTGGCTCTAATCTTGGTTTGCATGTGGATGTCCTTGTGGTTGCCTCTCCTCAGATGGAGTTATCTACTGCCTGTGAACCCGCAAAGTGTATGAGGTTTGACCTTGGAGCTCAATATGGTGGCCGCATCATGTTCTGGTCACTACCTTGCAGAGTGGGTGTCATTATGTCAGACACAGAGGCGAAGATAACAGCTCAGCCGTTACTGTGACGTTAAGAATTTCTTCTTTATGTAAATCAGGTCACATGACTCACTAATCCCAGTCCTCAGGGGCTCACCCTTGCACCCAGAATACAAACTACTTCAGTGGTCCTTAGCTAACCACACATAAGAATCTCCTGGGAGGACTGTGAAACACCGTACCACCTGGAACCCTCTCCAGACCACTTAAATCCACATTCTCCTCAGGTGGTTCTAACATACACACCCAGGATTGCAAGTGACTGTCCAACATCAACACTTCTTCACCTTCAAGATACTGAACAAACATAAAGAACTTAAACCGCAGATTCTGGTTGAGCAGGTGTGAGATGGGGCTTGAGGTGCTCCATCTCCAGCAAGCTCCTAGGTGATGCCAATGCTGCTGATCCCTACACCACACTTTGAGCAGTAAGTCTCCTCCCTGCTATCACAGACTATATTTATTTTCTTAGCTTAGCTATTTATGAAATGGGCAAGTTTAATCCATATGACCATTATATCTACTTCTGTGGGCAAGAATCCCTTAGAAGAAATGGAGTAGCCATCATGGTCAACAATGGAGTCCAAAATGCAGTACTTGGATGCAATTTCAAAAATGACAGAATGATCTCTGTTCCTTTCCAAAGCAAAACATTCAACATCACAGTAATCCAAGGCTATGCCCCAACCACCAGTGCCCAAGAAGCTGAAGCTGAATGGTTCTGTGAAGACCTGCAAGACCTTCCAGAACTAACCCCCCAAAAAGATGTTCTTTTCATCATAGGGGTCTGGAATGCAAAAGTAGGAAGTCAAGAGATACCTGGAGTAACAGGCAAGCTTGGCCTTGGAGTACAGAATGAAGCAGAGCAAAGGCTAACAGGGTTTTGCCAAGAAAATGCACTGGTCATAGCAAACACCCTCTTCCAACAACACAAGAGAAGACTCTACACATCAACATCACTAAATGGTAAATACCAAAATCAGACGAATTATTTTCTTTCCAGCCAAAGATGGAGAAGCTCTATACAGTCAGCAAAAATAAGACCAGGAGCTGACTGTGGCTCAGATCATGAACTCCTTATTGCAAATTCAGACTTAAATTGAAGAAAGTAGGGAAAATCACTAGGCCATTCAGTATGACCTAAGTCAAATCCCTTACGATTATACAGTGGAAGTGATGAGTAGATTCAAGGGATTAGATCTGATAGACAGTGTGCCTGAAGAACTATAGAAGGAAGTTCGTAACATTGTTTAGGAGGCAGTGATCAAAACCATCCCCAAGAAGAAGAAATGCAAAAAGTCAAAATGGTTGTCTGAGGAGGCCTTACAAATAGCTGAGAAAAGAAGACAAGCAAAGGGCAAAGGAGAAAAGGAAAGATGTATTTATCTGAATGCAGAGTTCCAAAGAATAGCAAGGAGAGATAAGAAAGCCTTCCTTAGTGATTAATGCAGAGAAATAGAGGAAAACAACAGAATGGGAAAGACTAGAGATGGCTTCAAGAAAATTAAAGATAGCAAGGGAACATTTCATGCAAAGATGGGCACAATAAAAGACAGAAACAGAACGGACCTAACAGAAGCAAAATATATTAAGAAGAGGTGGCAATAATACACAAGAGAAATATACAAAAAAGATCTTCATGACCCAGATATATATGATCACTCACTTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTATGAACAAAGCTAGTGGAGGTAATGGAATTCCAGTCGAGCTATTTCAAATCCTGAAAGACGATGCTGTGAAAATGTGCGCTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCGGTTTTAATTCCAATCCCAAAGAAAGACATTGTCAAAGAATGTTCAAACTACCACACAATTGGGCTGATCTCACATACTAGCAAAGTAATGCTCAAAATTCTCCAAGTGAGACTTCAACAGTACGTGAACTGAGAATTTCCAGATGTTCAAGTTGGATTTAGAAAAGGCAGTGGAACCACAGATCAAATTGCCAGCATCCATTTGATCATAGATAAAGCAAGAGAATACCAGAAAAACATCTACTTCTGCTTCATTGATTACACTAATGCCTTTGACTGTGTGTATCACAAAAAACTGGAAAATTCTTCAAGAGATTGGAATACCAGACCACCTTACCTGCCTCCCAAGAAATCTGTAGGTCAAGAAGCAACAGTTAGAACGGGACATGGAACAATAGACTGGTTCCAAATTGGGAAAGGAGTACATCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATACAGAATACATCATGTGAAAGTCTGGGCTGGATGAGGCACAAGCTGGAATCAAGATTGCCAGGAGAAATATCAGTAACCTGAAATATGCTGATGACACCACCCTTATGACAGAAAGTGAAAAGGAACTAAAGAGCGACTTGATGAACATGAAAGAGGAGAGTGAAAAAGCTAGCTTAAAATTCAGCATTCAGAAAACTAAGATCATGGCATCTAGTCCCATCCCTTCATGGTAGATAAATGGGGAAACAATGGAAACAGTGACAGACTTTATTTTCTTGGGCTCCAAAATCACTGCAGATGATGACTGCAGCCACAAAATTAAAAGATGCTTCCTTTTTGGAAGAAAAGCTATGACCAACCTAGATAGCATATTATAAAGCAGAGACATTAGTTTGATGACAAAGGTCCATATAGTCAAAGCTGTGGTTTTTCCAGTAGATATGTATGGATGTAAGAGTTGAAATATAAAGAAGGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAAATCAACCCTGTATATTCATTGGAAGCACTGAAGCTAAAGCTGAAACTCCAATACCTTGGCTACCTGATGGGAAGAACTGACTTATTGGAAAAGACCCTGAATCTGGGAAAGACTGAAGCCAGGAGGAGAAGGGGATGACAGAGGATGAGATGTTTGGCTGGCATCACCAACTTGAGGGACATGAGTTTGAGCAAGCTTCAGGAGTTGGTGATGGACAGGGAAGCCTGGCGTGCTGCAGTCCATGGAGTTGCAAAAAGTTGGACACGACTGAGCGACTGAACTGAACTGAACTGAACTAGCTCTTTGTCTTCCCTTCTAAACTGTAAGCTCTGTGAGAGCTAGGACTTTGTCCCAGAGCCCAGGATAACAGTGCTGTCACCCAACAGAATCAACGCATATTTGTATAATGAATCAATTATTAAATGAAAGAATGATTCTCAGTTGGGACTTGTGCTCAGGGCTAACATGAGGGTAAAGCAAGTCCATTACTTTGTGTCCATTAGTTAAACTGGGCAGTGGTCCAACATTTAAGTGGATATGTTCATCTTCAAAATTTTTAAGAACCTCTTTGCATGGTTAAATAAACACAATATTTAAAAGCATATTAATTACTGTTCATAATGATATTTGTTCCTAATTTTGAAGAATGTGCCCCTTCAAAAAGCATGAAAACCTTAAAATTTCATGTAGAACGAAATTAATGAAAAGTAACTGTTTTGCATTCACATCCTTGAATCTAAAAAAGCTTGCTGGTACCACAAATTGGGATTTTAAAATAACAGTAAGTGCCAAAGGAAATATATATATGTGGCAATTATATCATCTGTTTATGTGAAATATTGAGATGTAGATTGGTTGAAATCCAGAGCTTGATAATTCCCTTGCTCTAGAATCCAGAATTTTATCCAAGTGGCTATTACTCAAATAAGGTATTTCATTTGCTACGGGTGGGTGCCCCTTAACCTCACCTTGGCAGGATTGGTCATATCATAAATCATCCAGCCTCTTGGCATTGCCAGTTAGTCAAAAGGCACCCCCTCCCTCTAGCTGAGCTCTTCTGTTTATCTGCCTGGAAAGCATGGTTCCTTTCTTTGCTTTTCTTAAAACACCCTTGTCAACACAGTTAAAATACTATTTTAAAATGTATAGAATTTTCTATGCTTAGGATGTGATGAACTAGATCTCAAAATTATTGCTTTCAGAGGAAAACCATGGGAGACAAACAATCCGATAACAAGAGAAAGTTATTCTTTATTGGCTCTATAAATCCACCGACACAGGCTTCACAATATTTTACAGCACAAGGACCAGTGTCTCAAATGGAATTACAGGAGTGTTTTCTAACTGCAGCCTTTTGAAGTTTTTCCTAGGATGTACAGTTAGAAAAAGGGATGTGATTTTTGTTGATGGTGTCCTGCAGACTTAATAATTTATGCACTGTTGAAGCATTCTGCATAAATCAAACATGCTGATGCAGTCAGATATATGTGATAAAAGAAATACAGTCCATAGCATAATGAAAAAGAAGGAAGAACTTTGAAAGGAATGGCATATTCTTTTTTACCTTCCTTTGTTCCCTTCTTGTTTGGTTTACTTTTAAGCCCTTTGCTAATGTAACCAATGCCTAGAAAAGACATGGAATATAGATGCAAAATACTAATTCCATTTAGAACTGGCACTATTCCTTGAATACTTAGACTTATTAGTGAGATAATCACTAGCATCATATGAAATATCAAGGAAGGTTGAGATTATCCGGTGCAAATTTGGAATACAAAATATAATTTCTACTGTAACGTTTACAAAGCCTAACATAATAGTCAAGGGCACAGAGTCTGGAGCCAAGCTGCCTGGGTTAGATTGCCAGATTCGTACCCTCTTAGTTGTGTGGCTTTGGGTAATTTATTTAACCTCTCTGTGCCTCAACTTTCCCAGATGCAAAATGAGAATAGTAATAATAGCTATTATAATCATATAATAATAATAGTTATAATACCACATTGGATTGTTGTGAAAGTTAAATGGTTTAATATATATAGGAATTTAGAATGATGCCTGCATTACAATAAGCATCATATAAATGTTTATTCCTACCATATTGTATCAACATTACCTAACAGGTACATTCTATACCCAAGGCATGCTAATGCCAATCCAAGGAAGGCCATAATAGTAGTACTTCCATGACAATACATAATCTGTATTGCAATTATTGAATTTCATCAGTCTGTGTAATCTAGGTTGGCTCATCGACCATTTCTTTCACTCACTTGACGAACAAGTACCGACGCACACTTCCTGTGTGTCAGGCCCTATAGTGAAATAAAGGCTGAGATAAACACAGACCCTAGCCTCAGATGCTCCCAATCTCATAAAGGAAACTCGTGCAAACACATCGTTGAGATGTGACATGCTGAATGTTAAAATAGAATTATACCCAGGGGATAGAGTGGTGGGAGAGAGGGTGGAGTTGAAGGAGGAGGACAGTGGCTTAGCTTTTATAGGATAAGGAGGTGTTTTCCAGGTGACCAAGGGAGAGCCAGGCATGGGAAAGGAACTATGTTGTGCAAAAAGAGATCATGGTGAATTGGGGAAGCCATAAATGGTTCAATGTGCATGGAGTGTAGGGTATACGAAGAAAGATCAGCAGTTGAGCTCGGGGGCCGTCTCCTAGACTAGGACTGTCCAGGTCAGCATCTTCTCGGGTGTCTCGGTGTTTGTTTTTGCATTAACCCTCCCCTTGCTGGTCTCTTGATTTTCATTTTCTCAGACTTAGCTCATATCTGGCTCTTTCAGAAGCTGAGAATTTTATCTCCTTGAGGTAGTCCATCCCGGCCTGATATCTGCTGGTTGTGAGTGTAGAAAGAATTTTCCCCCCATAAAAATAGTGAGACAGATTTCTTTTCAGTGTGGAAAGGACCCATGTCTTCTTCCCCTGCCCTGTCATAGCCTATCCAAAGTCAAGGTGTTCTTGGCAGCGTCCCAGCCATTTATCCCAAACTCCTAGTGCAACCCTTTCTGATAAGATGCTACTTAAGACGTTAAAAAAAGAAAAAACAACATTTAAGCTCTAAGCATCTCCTTTCTATCCTCACTTAAGCGGTTGTGATTGCCAAGGACTCTGTGTCAGAGTTGGAGGTTAGATCTCTCTAACCTGTTAGATCGCCCATTTTGGAGGTTAGATCTGTCCCAGCCTCCTGCATCAAGTTTAGAGATTCACATTTTTAAAACTCCAATCTCAGATGGTACATGTATGGTCAGTTTTGAAATCCTCTCTGAAACATGGGCCTCAGGACAGAAGACACAGTGGCTGGGAGTTCAGTCTCTAGAGACAGAATTGAGTTCAGTTCCCATCTCATCCTCTTATTAACTGAGTGATGTGGGGTTAAGTGCTTTGAGACTCTGTTTTTAACTGGCAAAATGGTGTTAACAACATGTATCTCATTGTGTTGTTGTGAGGGTTGGATAAGTCTATATATAAATATCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTTGCTTAGAGAATTCCATGGACAGAAGAGCCTGGAGGGCTACAGTCCATGGAGCTGCAAAGAATATATACCTTTCAGTACAATGCCTTGCACAAAATAAATGCTCAATAAAAGCCCACCATTAGAGCAAAGCCGATGGAGACTTGACCTCTAACCAATGTCCTTTCCTTTTCAGTTCAGTTTAGTTCACTCAGTCGTGTCCAACTCTTTGCGACCCCATGGACTTCAGCACGCCAAACTTCCCTGTCCATCACCAACTCTCAGAGCTTGCTCCAACTCATGTCCAGTAGGCCTGATGCTCTGGGCACCTCTGTATTCTCCACAGCTGCTCTTCATCTCAGATCAAGTCAGTTTTTTGACTCCATATCTTGGGAGTCACAGGGAATTTTCCTTCTTTCCTTTAGAAACATGTCCCTTTTACGATCAGCAGTATTTGAGTAGGTAACATATCTGGGTGATAATCCACTGAAGCTTGAGCCCCACTCAAGCAGTCACAGAGCCCAGTTTGTGTGATCCAGCCTAGGAAATAGAATCAGGTTTTCTGATGTTCTAATTACAAATCTGTCCAGTTCCACCCACCCACCCATCCATCCATCCAAGAAACCTTTTTTACTTTGGATGACTTTCAAACAGGATAATCTGCCATTGTGCTTGTGTGTGCTTGTAGGGACTATACATGAGTAGCTCTGAGAAGCCTGCTTTGTCTCACAGAGCTCTTTATGTCTAGGGGAAACACACAAAAAATGAGCTCTTAAATAAGACTTCTAATATATCCCTATTGTCAAGGAAAAATAAAAACTCTACTTTAGAAGTATCTTTCATGTCCATGTGAAATACATGCAAATTTCATATGGAAAACCAACAAGTTAAGCACACTATTTCATCCCTCTTGGGGACCATTCTTGGATAAGTGGATGGATAGATAGAGGCATGGATGGGTGGACCGATTGGTTCTACATACAATACTAAGTTCCAGAAATACAAAGTCAATAAGACATGTCCCTTCCTTCAAGGAGTGTACAGGCTGGAATCTAGTGGATGAGAGAAATAAATGAACAACTACATACAGAGTAGAAGTATCTGTGGGACAATTATGAGGTCCAATTCATCCAGGGGATTCAGATCTTCCTGAAAAAGTGATACTAAAAGTAAGATTTTTTCAGGAAAGGGAGATTGTACCTCTCCCTAGACAGAAAATGGAACAGCTAAAGTAACAACTTGCCTAAGTGTGGAGCCGTAAGACAACAAGAATTTGAGAACTTCACATGGTTTGACGAGCATGACCATAGAATGACTGATCAGTGCACAGGCATGCAATAGCCACATTTTGAGGAATTTTACATATCAATAAAGACCTTCAGCTTTATTGTGAAACTTACTTAGAATTCAGAATTTCAGACAAAGTGAGAGTGTCATCAGCCTGACATTTTAAATCAAAAGGGAGAAAGAAAGGAGAATGGATTAGAGCAAGGCCAGGCTACATTTAGGGAAGCTGGGAATTGGGGTGAGAATTCAAGAAGGGCCTGAAAGTAGGTGATGGCCTTGGGAATGGAAGAGAGATGGCTAGAGAAAGGAAATAGAATCTGTAGGACTTGTGGCTGAATGGCTTTGAAAGATGATCTAGAGGGAGGGGTCTAGGATGATTCTTAGGTCTCTGACCTGGGTTTCAAGGGAAGTCAGGGTGGCAACATTCCTTATGAAAAGAATAGACTGAGCGTGGTTGGTGGTAAATATAACTATCTCTGGTAATCAATTTTTATGAAATACCCAATTATTTAGTTGCTGAGTTGTTCCCAACTCTTTGCAACCCCATGGACTACAGCCTACCAGGGATCCCCCGTCCATGGGATTTTCCAGGCAAGAATGCTGGATTGCCATTTCCTTCTCCAGAAATACCCAATAGGCATCTTAATAGACAAATCTGCTGGCCAGTTGAGTGGTTTGGACCAGAATCGTATATTTAGGATCATTTTATGGAAGTGGTATGTGAATCTATGGGGCTGTCACTCAGGAATAGCAGATGAAGTAAAAAAATTAAGATCAGAGGAGCCCTGGGTACATGGAGACTTACGAGGCCAATAGAAAGGGGGTCTTCAGTGGTTACTGAGAAGGAACCAGAGAGGAGACAGGAAAACCATGGTAACTGGGTGTTACAGAAGTTAATGGAAAAGCTTCAAAGGACACAGTATTAAATTCAATAAGATAAAAACATTATAAAGTCAACTGGATTGAACACACAGGTCATGGGAACTCCATGCAGCGGTGGAAGTAAGTTAGAAGGGAAAGGAATAAGAGCCACGGAGGGTGAAGAAATTGAGACTCTCCCTGTTTTGGGGTTGTAGGAAAACTATTATTATCTTCCCTAGTAACCAATTCGTTGTTCAGCAGTCTTTCCTATTAGGAAATTTTTTATGTCCATCTTATCAAATCTCTAATTCTTTAAATGATGAAAAGTTAATGTTAGTTTTTTCATCTTGAACAAAATTAACTTACTAAGAATCATGCTTATTACACAGATTTGGTTTGTTTATTTTTAAATTATAGTAGCCATGGCAAAAAATGGGAAAATGACTCCAATTCACTGGTGTTTGGATTATTTACAAGTACCTGTAAACAGTTTAAACAAAAGAGATTTCTGTTGCCATATGTTTGGAAATCCCCAAGGAAAAATTCAATCTCAAGTGTCAATAACATAGGAAGGCAGTTGGGCTGCTCTGAGTTGGGATCTTCGAATGTTTCGCTCTAAAGCTGTTCCAACAAAGTGTGCTTCTCTCCACACCCTCTCCAGCCTTTATTGTTTGAGGACTTTTTGATGGCAGTCATTCTGACCGGCTGCGTGAGGTGATACCTCATTGTGGTTTTGATTTGCATTTCTTTAATGATAAGTGATGTTGAGCATCTTGTCTTGTGTTTGTTAGCCATCTGTCTTCTTTGGAGAATGTCTGTTCAGTTCTTTGCCCACTTTTCGATTGGGTTGTTCGTTTTTCTGGTATTGAGCTGCATGAGCTGCTTGTACATTTTGGAGAGTAGTTCTTTGTCAGTTGCTTCATCTGCTGTTATTTTCTCCCAGTCCGAAGGCTGCCTTTTCACCTTGTTGTGAACAACTTGATGTTGTTCACCTAGTTCCTTCATTGTGCAAAAGTTTTTAAGTTTAACTAGATCCCATTTGTTTATTTTTGGTTTTGTTTCCATTACACTGGGAGGTGGATCCTAAAGAATCTTGCTGTGATTTATGTCAGAGAGTGTTCTGCCTATGTTTTCCTCTACAGTTTTATAGCTTCTGATCTTACATTTAAATCTTTAATCCATTTTGAGTTTATTTTTGTGTACGATGTTAGAAAGCGTCCTGGCTTCATTGTTTTACGCATGGTTGACCAGTTTTCCCAGCACCATTTGTTAAAGAGATCTTCTTTTTCTCCATTATATATTTCTCTTACACTGTTGGTGGGAATGCAAACTAGTACAGCCACTATGGAGAACAGTGTGGAGGTTCCTTAAAAAACTGGAAAGAGAACTGCCATATGACCCAGCAATCCCACTGCTGGGCATACACACCGAGGAAACCAGAATTGAAAGAGACATGTGTACCCCAATGTTCATTGTTTACGATAGGTAGGATATGGAAGCAACCTAGATGTCCATCAGCAGACGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTATCACTCACCTGTAAAAAAGAACACATTTGAGTCTCTTCTAATGAGGTGGATGAAACTGGAGCATATTATACAGAGTGAGGTAAATCAGAAAGAGAAAAACCAATACAGTATATTAATGCTTATACATGGAATTTAGAAAGACAGGAATGATGATCGTATATGCAAGGCAGCAAAAGAGACACAGATGTAAAGAACAGACTTTTGGACTCAGTGGGAGAAGGCGAGGGTGGGATGATTTGAGAGAACAGCACTGGAACATGTATATTACCATATGGAAAACAGATGACCAGGAAAATTCAATGCATGAAGCAGGGCACTCAAAGCCAGTGCACTGGGACCACCCTGAGGGATGGGGTGGGGAGGGAGGTGGGAGGGGGTTTCAGGATGGGGGCACATGTGCACCCGTGGGTGATTCATGCTGATGTGTGGCAAAAACCACCACAATATTGTAAAGTAATCATCCTCCAATTAAAATAAATTAATTAATTAAAAAAAGAAAGCATGCATGCTTTCTAGAATACTGAAGAGACTTCTATCACATCAAATAGATTCTCCGTATTGACACATAGTATGCTTATTTGTTTGTTTTGCTATTTTGTTTGTCAAGAAAATCTTAAAACTTTATGTAGATCTTTTATCTTTGTTGTTAAATTTATCCTGAGTATTTTGCAGCTTTTTTTCTCTTATTGGTAAATGGAAATTTATTTTGGTTTACTCTTCTGATTTATCTAAGAGAAGAAAATGTCAGAATGTTTATCTTGTACCACCTGGACATGTCTTATGAGTGTTAATTGTTTATGGTAAAGTCTCTTGAGTTTTCTATCATACTAATCATATTATTTACAAACAAAGATAAGTTTACCTTAACAACAACAACACGCTTTTTCAAAACGAGGAACGAGGGAGAATACACTTCTAGGCAAATGTCATCTGGAATGCCTTCTTCAATGTTAGACATTTTGACAACATCTGCTCTAACAGCAAAACACTGAGAACCCAAAATCTCTTTGGAAGAGAAGACTCCCCGGGAAACACAGTCATTTAGGCCACATCTGGTCTGAATTACTTGATTAATTTTCTTTTATTTACTAGTCTTCATTTGACAGTCGTGGTACTTTTTTCCAGAGCAGGAGTCAATAAAGCTGTAACTCTTTCTCCATCTGTGGTTCATTTTCCTCTTAGAAGAGATACAGAGGGTTTCAAGGAAAGTTGCTTTATGTTCTGCTATATTTGCAATCCTTCTTTTATTTCAG
Seq C2 exon
GGGCTTCCAGGACCAGCAGGAGAGGCAGGGAGTCAAGGCCGTTTGGGAAGCCAAGGAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012837:ENSBTAT00000017057:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100)
A:
NA
C2:
PF0139113=Collagen=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development