BtaINT0042861 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:68013802-68015135:-
Coord C1 exon
chr6:68015028-68015135
Coord A exon
chr6:68013913-68015027
Coord C2 exon
chr6:68013802-68013912
Length
1115 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGAGTGCTTGCTTCCTCCAGATT
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATTGCAGCGAGAATCTGTTTCACTGTCACACAGGCAAGTGCCTTAATTATAGCCTGGTGTGTGATGGATATGATGACTGTGGAGATCTGAGTGATGAACAAAACTGTG
Seq A exon
GTAAGTAACATTATTTCCCTAAAGGTTTTCACTTAAAATTATAGGAATTTATAATCAAAGCCTTGTAGTTCATTGTTTGTTAGTGTGGTTAGTGAGTTAAATTACAAAATGGTTTCTTAATTTTCAGGAAGAGGAGGCTTTTCCAATTACTAGTCTGTCATGTCTTATATGTAAATGTAATATTTCTTGGGTAAAGTCATACTAAAGAAACGTTAAAGAAGTGGAACGGAAATGGGAGTTAATATGTTTTTGTCTCTTTGAAAGTGTTTCTTCTTTGGTTGGAGTCAGTGGCTCATGGTTAGATTTGAGCTCTTGAGCAAAACTCTGCTTGCAATGCTTGATCCTCTTGTTATATATAACCAAAGACCTCTCCTGTATTTGATTGCCATGCACTACAGGGCGACTTCTGCAGTGGAGACATCAAGGGTTTGTTTTACGTTCAAAACTCATCTTATCTTTTAAAGAAGGAATCCACATACTAGTTGCATGTTTGTACCTGTAAACAACATCTTTCCAATACAGCCCACACCAGCCCCTGCTAGCCACTTGTCTATGTTGTACAAATTCAGCTTTTTTCCACATGTGATATACAGTATTTTTCTCTAACTTATCTCATTTAGGATACATTTACACAACATTTTATGTCAATTATATCTCAGTTAAAAAGAGGAATGAACCTTTTAAAGTTGTTTAGTTGCTAAGTCATGTTCGATTCTTTTGTGACCCTGTGAACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTTCCCAGACAAGAATACTGGAGTGGGTTGCAGTTTCCTTCTTCAGGGAATCTTCCCAACCCAAGGATCGAACCCATGTCTCCTGCATTAGCAGATGGATTTACCACTGAGCCACCACATTTTAAAGAACTGTGTTTAATTCTGAATGTCCTCTCCTGAATTTTTAATAAAACCGGCTGAATTCTTCTTGCTTGTTTACCATTTTGACTTTGTGATTAGCTCTCAAATTTTTGGTCGTGTATTATTTAGTGACAGAAGAACTTTCTAACTTGTACCGGCACTATGGGCCATACATTCCAAGTGTTTGTCATGTTGGTTCTCTCCATCCTCCTGAGTGCTTGCTTCCTCCAG
Seq C2 exon
ATTGCAACCCCATAGAGGAACATCGCTGTGGAGACGGGCGTTGCATTGCCATTGAATGGGTGTGTGATGGGGACCACGACTGCGTGGATAAATCCGATGAAGTCAATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199:ENSBTAT00000002847:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCGAGAATCTGTTTCACT
R:
AGCAATTGACTTCATCGGATTTATCC
Band lengths:
217-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]